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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35395 and RR42_RS35400 are separated by 478 nucleotides
RR42_RS35400 and RR42_RS35405 are separated by 345 nucleotides
RR42_RS35405 and RR42_RS35410 are separated by 12 nucleotides
RR42_RS35410 and RR42_RS35415 are separated by 243 nucleotides
RR42_RS35395: RR42_RS35395 - hypothetical protein, at 3,394,607 to 3,394,786
_RS35395
RR42_RS35400: RR42_RS35400 - iron permease FTR1, at 3,395,265 to 3,396,044
_RS35400
RR42_RS35405: RR42_RS35405 - arsenic ABC transporter ATPase, at 3,396,390 to 3,398,141
_RS35405
RR42_RS35410: RR42_RS35410 - arsenic resistance operon repressor, at 3,398,154 to 3,398,525
_RS35410
RR42_RS35415: RR42_RS35415 - hypothetical protein, at 3,398,769 to 3,399,329
_RS35415
Group
Condition
RR42
_RS35395
RR42
_RS35400
RR42
_RS35405
RR42
_RS35410
RR42
_RS35415
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.0
-0.3
-0.6
-0.2
carbon source
Protocatechuic Acid (C)
-0.6
-0.0
-0.3
-0.1
-0.0
carbon source
adipate (C)
-0.7
+0.0
-0.2
-0.2
+0.0
carbon source
Azelaic (C)
-0.7
-0.0
-0.2
+0.2
-0.1
nitrogen source
nitrate (N)
-0.5
+0.1
-0.0
-0.4
+0.0
nitrogen source
L-Tryptophan (N)
-0.4
-0.1
+0.1
+0.2
-0.5
carbon source
Suberic (C)
-0.7
-0.1
+0.1
+0.0
+0.1
carbon source
Azelaic (C)
-0.5
+0.1
-0.1
-0.2
+0.1
nitrogen source
L-Leucine (N)
-0.2
+0.1
-0.2
+0.2
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-0.2
-0.3
+0.3
-0.1
lb
LB
-0.5
-0.2
+0.1
+0.4
-0.1
carbon source
adipate (C)
-0.5
-0.1
-0.1
-0.1
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.2
-0.4
-0.2
-0.0
carbon source
Protocatechuic Acid (C)
-0.4
-0.2
-0.0
+0.2
+0.1
carbon source
Disodium Glutarate (C)
+0.4
-0.1
-0.1
-0.4
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.4
+0.0
+0.1
+0.3
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.1
+0.2
-0.1
-0.5
carbon source
L-Alanine (C)
-0.3
+0.0
-0.1
+0.3
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
+0.3
-0.2
+0.2
-0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.7
+0.1
+0.4
-1.1
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.2
+0.1
+0.3
+0.1
nitrogen source
D-Alanine (N)
+0.6
+0.1
-0.0
+0.1
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.2
+0.1
+0.3
+0.5
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.6
+0.2
+0.3
-0.1
+0.1
stress
R2A with nitrate 200 mM
+0.4
+0.0
+0.1
+0.3
+0.3
r2a
R2A
+0.1
+0.3
+0.3
+0.3
+0.2
nitrogen source
L-Serine (N)
+0.4
+0.3
+0.1
+0.3
+0.1
nitrogen source
L-Glutamine (N)
+0.4
+0.2
+0.3
+0.1
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.2
+0.2
+0.4
+0.1
carbon source
L-Asparagine (C)
+0.3
+0.3
+0.3
+0.6
+0.5
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RR42_RS35405
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