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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35370 and RR42_RS35375 are separated by 71 nucleotides
RR42_RS35375 and RR42_RS35380 are separated by 77 nucleotides
RR42_RS35380 and RR42_RS35385 are separated by 335 nucleotides
RR42_RS35385 and RR42_RS35390 are separated by 237 nucleotides
RR42_RS35370: RR42_RS35370 - copper oxidase, at 3,390,233 to 3,391,525
_RS35370
RR42_RS35375: RR42_RS35375 - RND transporter, at 3,391,597 to 3,392,958
_RS35375
RR42_RS35380: RR42_RS35380 - hypothetical protein, at 3,393,036 to 3,393,233
_RS35380
RR42_RS35385: RR42_RS35385 - hypothetical protein, at 3,393,569 to 3,393,802
_RS35385
RR42_RS35390: RR42_RS35390 - hypothetical protein, at 3,394,040 to 3,394,552
_RS35390
Group
Condition
RR42
_RS35370
RR42
_RS35375
RR42
_RS35380
RR42
_RS35385
RR42
_RS35390
stress
R2A with copper (II) chloride 0.25 mM
-4.2
-4.1
-4.5
-4.4
-0.2
nitrogen source
L-Serine (N)
-0.8
-0.5
-0.9
-0.5
+0.1
nitrogen source
D-Alanine (N)
-0.4
-0.5
-0.7
-0.6
+0.2
nitrogen source
L-Serine (N)
-0.6
-0.5
-0.1
-0.6
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.1
-0.7
-0.4
-0.1
nitrogen source
Glycine (N)
-0.6
-0.2
-0.6
-0.0
+0.2
nitrogen source
L-Glutamine (N)
-0.1
+0.2
-0.6
-0.8
+0.2
carbon source
Disodium Glutarate (C)
+0.2
-0.0
-0.1
-0.8
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.1
-0.6
-0.2
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.4
-0.0
-0.4
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.1
-0.1
-0.3
-0.2
carbon source
succinate (C)
-0.2
-0.1
-0.5
-0.1
-0.1
carbon source
Octanoic (C)
-0.5
+0.1
+0.0
-0.4
-0.2
nitrogen source
L-Asparagine (N)
-0.3
-0.3
-0.3
+0.0
+0.1
carbon source
L-Alanine (C)
-0.2
-0.1
-0.5
-0.2
+0.1
carbon source
adipate (C)
-0.1
+0.2
-0.1
-0.4
-0.3
nitrogen source
D-Alanine (N)
-0.2
-0.2
-0.4
-0.1
+0.3
carbon source
Pimelic (C)
+0.2
+0.1
-0.2
-0.5
-0.2
carbon source
Azelaic (C)
+0.2
+0.1
-0.1
-0.3
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.1
-0.2
+0.3
-0.3
carbon source
Dodecandioic (C)
-0.1
+0.0
+0.4
-0.4
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.2
-0.0
+0.3
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-0.2
-0.3
+0.3
+0.1
carbon source
L-Asparagine (C)
-0.2
-0.1
-0.2
+0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.1
+0.3
-0.4
+0.1
carbon source
butyrate (C)
-0.2
+0.0
-0.2
+0.4
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.1
-0.0
+0.5
+0.2
-0.3
stress
R2A with Zinc 0.1 mM
+0.1
+0.3
-0.3
+0.4
+0.1
nitrogen source
casaminos (N)
+0.2
+0.3
+0.4
+0.2
+0.0
r2a
R2A
+0.3
+0.2
+0.4
+0.4
+0.3
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