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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35360 and RR42_RS35365 are separated by 69 nucleotides
RR42_RS35365 and RR42_RS35370 are separated by 66 nucleotides
RR42_RS35370 and RR42_RS35375 are separated by 71 nucleotides
RR42_RS35375 and RR42_RS35380 are separated by 77 nucleotides
RR42_RS35360: RR42_RS35360 - copper resistance protein CopC, at 3,389,378 to 3,389,752
_RS35360
RR42_RS35365: RR42_RS35365 - RND transporter, at 3,389,822 to 3,390,166
_RS35365
RR42_RS35370: RR42_RS35370 - copper oxidase, at 3,390,233 to 3,391,525
_RS35370
RR42_RS35375: RR42_RS35375 - RND transporter, at 3,391,597 to 3,392,958
_RS35375
RR42_RS35380: RR42_RS35380 - hypothetical protein, at 3,393,036 to 3,393,233
_RS35380
Group
Condition
RR42
_RS35360
RR42
_RS35365
RR42
_RS35370
RR42
_RS35375
RR42
_RS35380
stress
R2A with copper (II) chloride 0.25 mM
-0.7
-1.3
-4.2
-4.1
-4.5
nitrogen source
L-Serine (N)
-0.0
-0.1
-0.8
-0.5
-0.9
carbon source
a-Ketoglutaric (C)
-0.6
-0.4
-0.2
-0.0
-0.1
nitrogen source
L-Asparagine (N)
-0.1
-0.2
-0.3
-0.3
-0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.7
-0.3
-0.2
+0.1
-0.2
nitrogen source
D-Alanine (N)
+0.3
+0.2
-0.4
-0.5
-0.7
nitrogen source
L-Serine (N)
-0.3
+0.4
-0.6
-0.5
-0.1
nitrogen source
Glycine (N)
+0.1
+0.3
-0.6
-0.2
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.2
-0.2
+0.1
-0.7
carbon source
L-Alanine (C)
+0.2
-0.3
-0.3
-0.1
-0.4
carbon source
Valeric (C)
-0.5
-0.3
-0.0
+0.2
-0.3
carbon source
Octanoic (C)
-0.8
+0.3
-0.5
+0.1
+0.0
nitrogen source
D-Alanine (N)
-0.1
+0.3
-0.2
-0.2
-0.4
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.9
+0.1
-0.2
-0.0
nitrogen source
L-Phenylalanine (N)
-0.7
+0.2
-0.2
+0.3
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.8
-0.4
-0.1
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.1
-0.3
+0.1
-0.1
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
-0.1
+0.3
-0.4
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.8
-0.3
-0.1
-0.0
+0.0
nitrogen source
L-Glutamine (N)
+0.5
+0.6
-0.1
+0.2
-0.6
carbon source
a-Ketoglutaric (C)
+0.4
+0.7
-0.1
-0.0
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+0.1
-0.1
+0.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.3
+0.5
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.6
+0.3
-0.2
+0.1
nitrogen source
L-Valine (N)
+0.3
+0.6
+0.3
-0.0
+0.1
temperature
R2A 23C
+0.4
+0.4
+0.2
+0.2
+0.0
temperature
R2A 37C
+0.6
+0.3
+0.2
+0.2
+0.2
r2a
R2A
+0.8
-0.2
+0.3
+0.2
+0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.9
+0.9
-0.1
-0.0
+0.1
nitrogen source
casaminos (N)
+0.4
+0.5
+0.2
+0.3
+0.4
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