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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35320 and RR42_RS35325 overlap by 4 nucleotides
RR42_RS35325 and RR42_RS35330 are separated by 291 nucleotides
RR42_RS35330 and RR42_RS35335 are separated by 229 nucleotides
RR42_RS35335 and RR42_RS35340 are separated by 229 nucleotides
RR42_RS35320: RR42_RS35320 - membrane protein, at 3,378,579 to 3,379,421
_RS35320
RR42_RS35325: RR42_RS35325 - hypothetical protein, at 3,379,418 to 3,380,038
_RS35325
RR42_RS35330: RR42_RS35330 - S-adenosylmethionine synthetase, at 3,380,330 to 3,381,511
_RS35330
RR42_RS35335: RR42_RS35335 - hypothetical protein, at 3,381,741 to 3,382,142
_RS35335
RR42_RS35340: RR42_RS35340 - cell division protein FtsH, at 3,382,372 to 3,384,315
_RS35340
Group
Condition
RR42
_RS35320
RR42
_RS35325
RR42
_RS35330
RR42
_RS35335
RR42
_RS35340
stress
R2A with Nickel (II) chloride 0.5 mM
-0.5
-0.3
-0.4
-0.5
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
-0.1
-0.0
-0.6
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.3
-0.3
-0.3
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
-0.4
-0.2
-0.0
+0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.3
-0.4
-0.2
-0.0
-0.2
stress
R2A with nitrate 150 mM
-0.1
-0.2
-0.2
-0.5
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.0
-0.2
+0.1
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.0
-0.1
+0.1
-0.4
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.2
-0.3
-0.2
-0.1
-0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.1
-0.3
-0.4
+0.1
carbon source
Ethanol (C)
+0.2
-0.1
-0.1
-0.6
+0.1
carbon source
Dodecandioic (C)
-0.7
+0.1
+0.2
-0.3
+0.1
carbon source
D,L-Lactate (C)
-0.1
-0.1
+0.0
-0.6
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.1
-0.2
-0.3
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.6
-0.0
-0.1
+0.1
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.2
-0.5
+0.3
+0.1
carbon source
adipate (C)
+0.5
+0.1
+0.1
-0.6
-0.2
carbon source
adipate (C)
+0.3
+0.1
-0.1
-0.4
-0.1
lb
LB
+0.6
+0.3
+0.2
-0.8
-0.4
nitrogen source
L-Isoleucine (N)
+0.4
-0.0
+0.1
-0.3
-0.1
carbon source
L-Leucine (C)
+0.3
-0.1
-0.2
+0.3
-0.1
carbon source
Azelaic (C)
+0.2
+0.1
+0.1
-0.4
+0.3
carbon source
Pimelic (C)
+0.3
+0.0
+0.1
-0.3
+0.2
nitrogen source
nitrite (N)
-0.2
-0.1
+0.4
+0.4
+0.0
nitrogen source
L-Tryptophan (N)
-0.2
+0.2
+0.3
+0.4
-0.0
carbon source
Protocatechuic Acid (C)
-0.1
+0.3
+0.3
-0.2
+0.4
stress
R2A with Chloride 300 mM
-0.1
-0.1
+0.3
+0.4
+0.2
nitrogen source
Glucuronamide (N)
+0.7
+0.0
-0.0
+0.2
+0.2
temperature
R2A 23C
+0.7
+0.1
+0.1
+0.2
-0.1
nitrogen source
casaminos (N)
+0.2
+0.1
+0.4
+0.4
+0.3
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