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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35210 and RR42_RS35215 are separated by 71 nucleotides
RR42_RS35215 and RR42_RS35220 are separated by 37 nucleotides
RR42_RS35220 and RR42_RS35225 are separated by 72 nucleotides
RR42_RS35225 and RR42_RS35230 are separated by 19 nucleotides
RR42_RS35210: RR42_RS35210 - TetR family transcriptional regulator, at 3,351,862 to 3,353,091
_RS35210
RR42_RS35215: RR42_RS35215 - peptide ABC transporter ATP-binding protein, at 3,353,163 to 3,354,152
_RS35215
RR42_RS35220: RR42_RS35220 - peptide ABC transporter ATP-binding protein, at 3,354,190 to 3,355,173
_RS35220
RR42_RS35225: RR42_RS35225 - peptide ABC transporter substrate-binding protein, at 3,355,246 to 3,356,958
_RS35225
RR42_RS35230: RR42_RS35230 - ABC transporter permease, at 3,356,978 to 3,357,913
_RS35230
Group
Condition
RR42
_RS35210
RR42
_RS35215
RR42
_RS35220
RR42
_RS35225
RR42
_RS35230
lb
LB
-0.3
+0.1
-3.4
+0.0
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.2
-1.9
-0.5
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.2
-1.5
-0.3
+0.0
carbon source
Azelaic (C)
-0.2
-0.2
-1.4
+0.1
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
+0.2
-1.5
+0.2
-0.1
carbon source
L-Asparagine (C)
-0.3
-0.0
-0.8
-0.0
-0.3
carbon source
D-Fructose (C)
+0.0
-0.1
-1.3
-0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.2
-1.1
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.6
-0.0
-0.8
-0.2
+0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.0
-0.5
-0.3
-0.6
stress
R2A with Cobalt chloride 0.5 mM
+0.2
+0.2
-1.0
+0.1
-0.6
stress
R2A with Zinc 0.1 mM
+0.0
+0.1
-1.2
-0.1
+0.1
carbon source
pyruvate (C)
-0.3
+0.1
-1.0
+0.2
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
-0.1
-1.1
+0.1
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
+0.3
-1.3
+0.2
+0.1
carbon source
Trisodium citrate (C)
-0.3
+0.1
-0.6
+0.3
-0.2
nitrogen source
L-Valine (N)
-0.1
+0.2
-1.0
+0.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+0.3
-0.5
+0.1
-0.3
nitrogen source
L-Glutamine (N)
-0.1
-0.3
+0.6
-0.3
+0.2
nitrogen source
D-Alanine (N)
-0.1
+0.1
+0.7
-0.2
-0.4
carbon source
Protocatechuic Acid (C)
-0.2
-0.0
+0.9
+0.2
-0.7
r2a
R2A
-0.2
+0.1
+0.7
+0.2
-0.3
carbon source
Heptanoic (C)
-0.0
+0.3
+1.1
-0.3
-0.4
nitrogen source
L-Phenylalanine (N)
+0.5
+0.0
+0.6
-0.2
-0.1
nitrogen source
L-Tryptophan (N)
-0.0
+0.1
+1.1
-0.1
-0.1
nitrogen source
L-Serine (N)
+0.4
-0.0
+0.9
+0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.1
+1.4
-0.4
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.1
+1.2
-0.1
+0.6
carbon source
Suberic (C)
-0.2
+0.1
+1.3
+0.3
-0.1
stress
R2A with sodium fluoride 100 mM
+0.3
+0.2
+1.1
+0.1
-0.0
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