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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35195 and RR42_RS35200 are separated by 84 nucleotides
RR42_RS35200 and RR42_RS35205 are separated by 334 nucleotides
RR42_RS35205 and RR42_RS35210 are separated by 314 nucleotides
RR42_RS35210 and RR42_RS35215 are separated by 71 nucleotides
RR42_RS35195: RR42_RS35195 - 2,5-diketo-D-gluconic acid reductase, at 3,349,111 to 3,349,914
_RS35195
RR42_RS35200: RR42_RS35200 - epimerase, at 3,349,999 to 3,350,901
_RS35200
RR42_RS35205: RR42_RS35205 - translation initiation inhibitor, at 3,351,236 to 3,351,547
_RS35205
RR42_RS35210: RR42_RS35210 - TetR family transcriptional regulator, at 3,351,862 to 3,353,091
_RS35210
RR42_RS35215: RR42_RS35215 - peptide ABC transporter ATP-binding protein, at 3,353,163 to 3,354,152
_RS35215
Group
Condition
RR42
_RS35195
RR42
_RS35200
RR42
_RS35205
RR42
_RS35210
RR42
_RS35215
carbon source
adipate (C)
-0.6
-0.4
-0.8
-0.0
+0.2
carbon source
L-Alanine (C)
-0.6
-0.4
-0.2
-0.1
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.3
-0.7
-0.2
-0.0
carbon source
Valeric (C)
-0.1
-0.3
-0.6
+0.1
-0.1
carbon source
Octanoic (C)
-0.5
-0.4
-0.2
+0.0
+0.1
nitrogen source
casaminos (N)
-0.6
-0.3
-0.2
+0.1
+0.2
carbon source
pyruvate (C)
-0.5
-0.2
+0.1
-0.3
+0.1
carbon source
L-Phenylalanine (C)
-0.1
-0.4
+0.4
-0.4
-0.0
nitrogen source
Glucuronamide (N)
-0.2
-0.6
-0.1
+0.2
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.2
-0.9
+0.2
+0.2
carbon source
Dodecandioic (C)
-0.5
-0.4
-0.0
+0.2
+0.2
nitrogen source
L-Glutamine (N)
+0.3
-0.3
-0.1
-0.1
-0.3
carbon source
L-Malic (C)
-0.2
-0.3
+0.4
-0.4
+0.0
carbon source
Heptanoic (C)
-1.0
-0.1
+0.4
-0.0
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
+0.2
+0.2
+0.2
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
+0.3
-0.0
+0.1
+0.1
nitrogen source
L-Tryptophan (N)
+0.4
-0.4
+0.1
+0.0
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.6
+0.2
-0.1
+0.2
carbon source
a-Ketoglutaric (C)
+0.3
-0.3
+0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.5
-0.3
-0.2
-0.1
nitrogen source
Glycine (N)
+0.5
-0.4
+0.0
+0.2
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
+0.3
+0.1
+0.1
+0.3
carbon source
L-Proline (C)
+0.3
-0.5
+0.4
-0.1
+0.1
carbon source
Valeric (C)
-0.3
-0.0
+0.5
-0.1
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.6
-0.4
+0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.5
+0.3
-0.0
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
+0.4
-0.2
-0.6
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
+0.4
+0.3
-0.6
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
-0.3
+0.3
-0.1
-0.2
nitrogen source
L-Isoleucine (N)
+0.5
+0.2
-0.2
+0.2
-0.2
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