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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35140 and RR42_RS35145 are separated by 10 nucleotides
RR42_RS35145 and RR42_RS35150 are separated by 82 nucleotides
RR42_RS35150 and RR42_RS35155 are separated by 419 nucleotides
RR42_RS35155 and RR42_RS35160 are separated by 171 nucleotides
RR42_RS35140: RR42_RS35140 - 2-hydroxylaminobenzoate mutase, at 3,336,139 to 3,336,603
_RS35140
RR42_RS35145: RR42_RS35145 - aldehyde dehydrogenase, at 3,336,614 to 3,338,158
_RS35145
RR42_RS35150: RR42_RS35150 - 4-hydroxybenzoate--CoA ligase, at 3,338,241 to 3,339,812
_RS35150
RR42_RS35155: RR42_RS35155 - MFS transporter, at 3,340,232 to 3,341,611
_RS35155
RR42_RS35160: RR42_RS35160 - MFS transporter, at 3,341,783 to 3,343,030
_RS35160
Group
Condition
RR42
_RS35140
RR42
_RS35145
RR42
_RS35150
RR42
_RS35155
RR42
_RS35160
stress
R2A with copper (II) chloride 0.25 mM
-1.5
-0.3
-0.2
-0.1
-0.4
carbon source
L-Lactate (C)
-1.7
-0.4
-0.2
+0.0
-0.1
carbon source
Protocatechuic Acid (C)
-1.4
+0.1
-0.0
+0.0
-0.5
carbon source
L-Threonine (C)
-1.8
-0.1
-0.2
+0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-1.2
-0.4
-0.2
+0.1
+0.1
carbon source
Azelaic (C)
-1.0
+0.0
-0.2
-0.0
-0.3
carbon source
D-Lactate (C)
-1.1
-0.2
-0.0
+0.0
-0.2
stress
R2A with nitrate 200 mM
-0.7
-0.2
-0.2
-0.0
-0.1
carbon source
succinate (C)
-0.6
+0.2
-0.1
-0.2
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
-0.3
-0.1
-0.0
-0.3
carbon source
pyruvate (C)
-0.6
-0.2
-0.1
+0.1
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.0
-0.2
-0.0
-0.0
+0.0
carbon source
D-Fructose (C)
-1.5
-0.0
+0.0
+0.2
+0.1
stress
R2A with Chloride 300 mM
-0.8
-0.3
-0.1
+0.2
-0.2
carbon source
D,L-Lactate (C)
-0.8
-0.1
-0.2
-0.2
+0.2
stress
R2A with Chlorite 4 mM
-0.7
-0.1
-0.1
+0.2
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.0
+0.2
-0.0
+0.2
-0.4
carbon source
propionate (C)
-0.7
+0.2
-0.1
-0.0
-0.2
carbon source
Hexanoic (C)
-0.7
+0.2
+0.1
-0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
-0.2
-0.2
+0.2
-0.2
nitrogen source
L-Leucine (N)
-0.8
+0.1
-0.2
+0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
-0.1
-0.3
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.3
-0.2
-0.0
+0.5
nitrogen source
L-Glutamine (N)
+0.7
+0.1
+0.1
+0.1
-0.5
carbon source
adipate (C)
+0.9
-0.1
-0.1
+0.0
-0.3
stress
R2A with Lomefloxacin 0.001 mM
+1.1
-0.2
-0.4
-0.1
+0.3
carbon source
Disodium Glutarate (C)
+0.7
+0.3
+0.0
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
-0.1
-0.0
+0.3
-0.1
carbon source
L-Leucine (C)
+0.7
-0.2
+0.1
+0.2
-0.1
nitrogen source
L-Valine (N)
+0.7
-0.1
+0.2
+0.1
-0.1
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