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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35105 and RR42_RS35110 are separated by 88 nucleotides
RR42_RS35110 and RR42_RS35115 are separated by 152 nucleotides
RR42_RS35115 and RR42_RS35120 are separated by 52 nucleotides
RR42_RS35120 and RR42_RS35125 are separated by 118 nucleotides
RR42_RS35105: RR42_RS35105 - hydrolase, at 3,328,330 to 3,329,418
_RS35105
RR42_RS35110: RR42_RS35110 - hypothetical protein, at 3,329,507 to 3,329,689
_RS35110
RR42_RS35115: RR42_RS35115 - riboflavin synthase subunit beta, at 3,329,842 to 3,330,312
_RS35115
RR42_RS35120: RR42_RS35120 - benzoyl-CoA oxygenase, at 3,330,365 to 3,331,645
_RS35120
RR42_RS35125: RR42_RS35125 - benzoyl-CoA oxygenase, at 3,331,764 to 3,333,191
_RS35125
Group
Condition
RR42
_RS35105
RR42
_RS35110
RR42
_RS35115
RR42
_RS35120
RR42
_RS35125
carbon source
Protocatechuic Acid (C)
-0.2
-2.5
+0.6
+0.2
-0.3
nitrogen source
L-Glutamine (N)
-0.5
-1.4
-0.3
+0.1
+0.0
carbon source
propionate (C)
-0.0
-1.5
-0.3
-0.1
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
-1.0
+0.0
-0.3
-0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-1.5
+0.5
-0.3
-0.3
carbon source
butyrate (C)
-0.1
-0.7
-0.2
-0.2
-0.2
carbon source
L-Histidine (C)
-0.4
-0.8
+0.1
-0.1
-0.0
nitrogen source
L-Isoleucine (N)
+0.1
-1.0
-0.1
-0.2
+0.1
carbon source
L-Alanine (C)
-0.4
-0.5
+0.3
-0.1
-0.2
carbon source
L-Histidine (C)
+0.2
-0.0
-1.0
-0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.6
+0.1
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-1.1
-0.0
-0.1
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-1.0
+0.3
+0.1
-0.0
carbon source
propionate (C)
-0.5
+0.5
+0.2
-0.2
-0.3
carbon source
Pimelic (C)
-0.4
+0.6
-0.5
+0.1
+0.1
carbon source
L-Asparagine (C)
-0.2
+0.8
+0.0
-0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.8
+0.7
+0.2
-0.3
stress
R2A with Chlorite 4 mM
+0.3
-0.8
+0.8
+0.0
-0.1
nitrogen source
nitrite (N)
+0.1
-0.6
+0.6
+0.2
+0.1
stress
R2A with Cobalt chloride 0.3 mM
+0.7
-0.3
+0.2
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+1.1
-0.5
-0.2
-0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.5
+0.6
-0.3
-0.1
-0.2
stress
R2A with A22 0.01 mg/ml
+0.2
+0.8
+0.1
-0.1
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.5
+0.8
-0.4
-0.1
-0.0
carbon source
Dodecandioic (C)
+0.0
+0.7
+0.5
+0.1
-0.3
carbon source
Suberic (C)
+0.2
-0.1
+0.9
+0.2
-0.0
carbon source
Pimelic (C)
+0.2
+0.8
+0.7
+0.1
-0.1
carbon source
Hexanoic (C)
+0.4
+1.1
-0.1
+0.2
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
+1.2
+0.2
+0.3
-0.2
carbon source
Hexanoic (C)
+0.1
+0.8
+0.8
+0.1
+0.1
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