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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35075 and RR42_RS35080 are separated by 148 nucleotides
RR42_RS35080 and RR42_RS35085 are separated by 53 nucleotides
RR42_RS35085 and RR42_RS35090 are separated by 56 nucleotides
RR42_RS35090 and RR42_RS35095 are separated by 291 nucleotides
RR42_RS35075: RR42_RS35075 - AraC family transcriptional regulator, at 3,321,752 to 3,322,546
_RS35075
RR42_RS35080: RR42_RS35080 - membrane protein, at 3,322,695 to 3,323,588
_RS35080
RR42_RS35085: RR42_RS35085 - MarR family transcriptional regulator, at 3,323,642 to 3,324,106
_RS35085
RR42_RS35090: RR42_RS35090 - DSBA oxidoreductase, at 3,324,163 to 3,325,776
_RS35090
RR42_RS35095: RR42_RS35095 - hypothetical protein, at 3,326,068 to 3,327,222
_RS35095
Group
Condition
RR42
_RS35075
RR42
_RS35080
RR42
_RS35085
RR42
_RS35090
RR42
_RS35095
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.4
-1.0
+0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+0.2
-1.8
-0.0
+0.2
carbon source
Pimelic (C)
-0.6
+0.6
-1.6
+0.0
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.2
-0.2
-0.2
-0.4
carbon source
adipate (C)
-0.7
+0.8
-1.6
+0.3
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.3
-0.4
-0.0
-0.3
nitrogen source
nitrite (N)
-0.2
-0.2
-0.8
+0.0
-0.1
lb
LB
+0.7
-1.3
-0.2
-0.1
-0.1
carbon source
adipate (C)
-0.5
+0.8
-1.7
+0.3
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.3
-0.7
-0.2
-0.0
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.4
-0.8
+0.0
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
-0.5
-0.1
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.0
-1.0
-0.2
+0.0
carbon source
Protocatechuic Acid (C)
+0.1
-0.1
-0.8
+0.1
+0.0
carbon source
Pimelic (C)
-0.8
+0.9
-1.1
+0.2
-0.0
nitrogen source
D-Alanine (N)
-0.4
+0.2
-0.4
-0.0
+0.0
carbon source
L-Threonine (C)
-0.2
+0.1
-0.6
+0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.3
+0.3
-0.3
+0.0
r2a
R2A
-0.3
+0.2
-0.5
+0.0
+0.1
carbon source
succinate (C)
-0.3
+0.3
-0.2
-0.1
+0.0
carbon source
Suberic (C)
-0.2
+0.3
-0.6
+0.1
+0.1
carbon source
L-Proline (C)
-0.1
+0.4
-0.5
+0.0
+0.1
carbon source
L-Tryptophan (C)
-0.2
+0.5
-0.2
-0.1
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.5
-0.1
-0.5
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.5
+0.4
-0.1
+0.1
carbon source
D-Fructose (C)
-0.3
+0.4
+0.3
-0.1
+0.0
carbon source
L-Leucine (C)
-0.1
+0.7
+0.4
-0.1
+0.0
nitrogen source
L-Leucine (N)
+0.4
+0.5
+0.2
-0.0
+0.1
carbon source
L-Leucine (C)
-0.1
+0.6
+0.7
-0.1
+0.0
nitrogen source
L-Tryptophan (N)
+0.4
+0.3
+0.5
+0.0
+0.1
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