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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35065 and RR42_RS35070 are separated by 151 nucleotides
RR42_RS35070 and RR42_RS35075 are separated by 9 nucleotides
RR42_RS35075 and RR42_RS35080 are separated by 148 nucleotides
RR42_RS35080 and RR42_RS35085 are separated by 53 nucleotides
RR42_RS35065: RR42_RS35065 - LuxR family transcriptional regulator, at 3,319,612 to 3,320,313
_RS35065
RR42_RS35070: RR42_RS35070 - cobyrinic acid a,c-diamide synthase, at 3,320,465 to 3,321,742
_RS35070
RR42_RS35075: RR42_RS35075 - AraC family transcriptional regulator, at 3,321,752 to 3,322,546
_RS35075
RR42_RS35080: RR42_RS35080 - membrane protein, at 3,322,695 to 3,323,588
_RS35080
RR42_RS35085: RR42_RS35085 - MarR family transcriptional regulator, at 3,323,642 to 3,324,106
_RS35085
Group
Condition
RR42
_RS35065
RR42
_RS35070
RR42
_RS35075
RR42
_RS35080
RR42
_RS35085
carbon source
Pimelic (C)
+0.1
-0.4
-0.6
+0.6
-1.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.3
-0.2
+0.2
-1.8
carbon source
adipate (C)
-0.1
-0.2
-0.5
+0.8
-1.7
carbon source
adipate (C)
+0.3
-0.2
-0.7
+0.8
-1.6
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.2
-0.3
-0.4
-1.0
stress
R2A with Bacitracin 0.5 mg/ml
-0.5
-0.3
-0.4
-0.1
+0.0
carbon source
Pimelic (C)
-0.2
-0.0
-0.8
+0.9
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
-0.1
-0.2
-0.3
+0.3
nitrogen source
nitrite (N)
+0.2
-0.1
-0.2
-0.2
-0.8
lb
LB
-0.4
+0.5
+0.7
-1.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.2
-0.4
+0.2
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.0
+0.2
-0.4
-0.8
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
-0.0
+0.4
+0.0
-1.0
carbon source
L-Proline (C)
-0.1
-0.3
-0.1
+0.4
-0.5
carbon source
Suberic (C)
+0.2
-0.2
-0.2
+0.3
-0.6
carbon source
succinate (C)
+0.1
-0.3
-0.3
+0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.1
+0.2
-0.3
-0.7
stress
R2A with Cobalt chloride 0.3 mM
-0.6
-0.2
+0.1
+0.4
-0.1
r2a
R2A
+0.3
-0.1
-0.3
+0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.1
+0.2
-0.5
+0.4
stress
R2A with Chloride 300 mM
-0.3
+0.1
-0.4
+0.2
+0.4
temperature
R2A 23C
-0.4
-0.3
+0.4
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.9
+0.3
-0.2
-0.3
-0.4
nitrogen source
L-Serine (N)
-0.3
-0.1
+0.3
+0.1
+0.3
nitrogen source
L-Leucine (N)
-0.1
-0.1
+0.4
+0.5
+0.2
carbon source
Ethanol (C)
+0.3
+0.1
-0.2
+0.1
+0.4
carbon source
L-Leucine (C)
-0.1
-0.1
-0.1
+0.7
+0.4
nitrogen source
L-Tryptophan (N)
-0.2
-0.0
+0.4
+0.3
+0.5
stress
R2A with A22 0.01 mg/ml
+0.3
+0.3
+0.3
-0.1
+0.3
carbon source
L-Leucine (C)
-0.3
+0.1
-0.1
+0.6
+0.7
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