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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35060 and RR42_RS35065 are separated by 399 nucleotides
RR42_RS35065 and RR42_RS35070 are separated by 151 nucleotides
RR42_RS35070 and RR42_RS35075 are separated by 9 nucleotides
RR42_RS35075 and RR42_RS35080 are separated by 148 nucleotides
RR42_RS35060: RR42_RS35060 - LysR family transcriptional regulator, at 3,318,259 to 3,319,212
_RS35060
RR42_RS35065: RR42_RS35065 - LuxR family transcriptional regulator, at 3,319,612 to 3,320,313
_RS35065
RR42_RS35070: RR42_RS35070 - cobyrinic acid a,c-diamide synthase, at 3,320,465 to 3,321,742
_RS35070
RR42_RS35075: RR42_RS35075 - AraC family transcriptional regulator, at 3,321,752 to 3,322,546
_RS35075
RR42_RS35080: RR42_RS35080 - membrane protein, at 3,322,695 to 3,323,588
_RS35080
Group
Condition
RR42
_RS35060
RR42
_RS35065
RR42
_RS35070
RR42
_RS35075
RR42
_RS35080
stress
R2A with Bacitracin 0.5 mg/ml
-0.4
-0.5
-0.3
-0.4
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.7
-0.1
-0.2
-0.3
lb
LB
-0.5
-0.4
+0.5
+0.7
-1.3
carbon source
L-Histidine (C)
-0.5
-0.2
-0.2
-0.2
+0.1
stress
R2A with nitrate 150 mM
-0.4
-0.3
+0.2
-0.4
-0.0
stress
R2A with Chloride 300 mM
-0.3
-0.3
+0.1
-0.4
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.2
-0.1
+0.2
-0.5
carbon source
Pimelic (C)
-0.1
+0.1
-0.4
-0.6
+0.6
carbon source
propionate (C)
-0.2
-0.2
-0.3
+0.4
+0.0
carbon source
L-Tryptophan (C)
-0.5
+0.0
-0.1
-0.2
+0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.0
-0.6
-0.2
+0.1
+0.4
carbon source
Disodium Glutarate (C)
-0.4
+0.2
-0.2
-0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.2
-0.2
-0.4
+0.2
carbon source
succinate (C)
-0.1
+0.1
-0.3
-0.3
+0.3
carbon source
L-Proline (C)
-0.1
-0.1
-0.3
-0.1
+0.4
carbon source
adipate (C)
-0.2
-0.1
-0.2
-0.5
+0.8
stress
R2A with Cobalt chloride 0.5 mM
+0.3
+0.1
+0.2
-0.3
-0.4
carbon source
Suberic (C)
-0.3
+0.2
-0.1
-0.2
+0.5
temperature
R2A 23C
+0.1
-0.4
-0.3
+0.4
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
+0.4
-0.3
+0.1
+0.1
nitrogen source
L-Valine (N)
-0.6
+0.2
+0.0
+0.2
+0.3
carbon source
Pimelic (C)
+0.2
-0.2
-0.0
-0.8
+0.9
carbon source
adipate (C)
+0.0
+0.3
-0.2
-0.7
+0.8
stress
R2A with Lomefloxacin 0.001 mM
-0.6
+0.9
+0.3
-0.2
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+0.4
-0.2
+0.3
+0.0
nitrogen source
L-Leucine (N)
-0.2
-0.1
-0.1
+0.4
+0.5
carbon source
L-Leucine (C)
-0.0
-0.3
+0.1
-0.1
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.4
-0.2
-0.2
+0.1
carbon source
L-Malic (C)
+0.4
-0.0
+0.4
-0.2
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
+0.3
+0.3
-0.2
-0.1
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