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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34835 and RR42_RS34840 overlap by 4 nucleotides
RR42_RS34840 and RR42_RS34845 overlap by 4 nucleotides
RR42_RS34845 and RR42_RS34850 are separated by 142 nucleotides
RR42_RS34850 and RR42_RS34855 are separated by 560 nucleotides
RR42_RS34835: RR42_RS34835 - chemotaxis protein CheR, at 3,264,723 to 3,265,412
_RS34835
RR42_RS34840: RR42_RS34840 - chemotaxis protein CheA, at 3,265,409 to 3,267,796
_RS34840
RR42_RS34845: RR42_RS34845 - chemotaxis protein, at 3,267,793 to 3,268,815
_RS34845
RR42_RS34850: RR42_RS34850 - diguanylate cyclase, at 3,268,958 to 3,269,938
_RS34850
RR42_RS34855: RR42_RS34855 - LuxR family transcriptional regulator, at 3,270,499 to 3,271,206
_RS34855
Group
Condition
RR42
_RS34835
RR42
_RS34840
RR42
_RS34845
RR42
_RS34850
RR42
_RS34855
nitrogen source
casaminos (N)
-0.7
-0.3
-0.8
-0.1
-0.9
nitrogen source
L-Serine (N)
-0.4
-0.3
-0.8
-0.2
-0.5
nitrogen source
L-Glutamine (N)
-0.8
-0.1
-1.0
+0.0
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.5
-0.2
-0.5
-0.4
-0.4
r2a
R2A
-0.4
-0.3
-0.7
-0.4
-0.0
nitrogen source
Glucuronamide (N)
-0.2
-0.4
-0.4
-0.2
-0.4
temperature
R2A 23C
-0.5
-0.3
-0.8
+0.1
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.3
-0.4
+0.0
-0.5
carbon source
propionate (C)
+0.2
-0.1
-0.4
-0.3
-0.6
carbon source
Octanoic (C)
-0.2
-0.2
-0.8
+0.2
-0.3
carbon source
a-Ketoglutaric (C)
-0.4
+0.2
-0.7
-0.1
-0.1
nitrogen source
L-Serine (N)
-0.4
+0.1
-0.6
+0.1
-0.3
nitrogen source
L-Isoleucine (N)
-0.4
-0.2
-0.5
+0.2
-0.3
carbon source
D-Fructose (C)
-0.4
+0.3
-0.6
-0.2
-0.2
carbon source
Protocatechuic Acid (C)
-0.9
-0.1
-0.3
+0.1
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.3
-0.2
-0.2
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.7
-0.0
-0.7
+0.2
+0.3
carbon source
L-Asparagine (C)
-0.3
+0.3
-0.3
-0.3
-0.4
carbon source
Azelaic (C)
-0.6
-0.5
-0.1
+0.3
+0.2
carbon source
Octanoic (C)
-0.2
+0.1
-0.7
+0.3
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
+0.1
-0.1
+0.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+0.1
-1.1
+0.3
+0.3
carbon source
D,L-Lactate (C)
-0.3
+0.0
-0.5
+0.2
+0.4
lb
LB
+0.3
+0.4
-0.3
+0.3
-0.8
carbon source
L-Alanine (C)
-0.0
+0.2
-0.4
-0.3
+0.6
carbon source
succinate (C)
-0.1
+0.3
-0.3
-0.2
+0.5
stress
R2A with Zinc 0.1 mM
-0.6
+0.2
-0.3
+0.7
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.6
+0.2
-0.1
-0.1
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+0.4
-0.4
+0.5
+0.1
stress
R2A with Chloride 300 mM
-0.2
+0.1
+0.3
+0.1
+0.8
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