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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34680 and RR42_RS34685 are separated by 75 nucleotides
RR42_RS34685 and RR42_RS34690 are separated by 210 nucleotides
RR42_RS34690 and RR42_RS34695 are separated by 324 nucleotides
RR42_RS34695 and RR42_RS34700 are separated by 50 nucleotides
RR42_RS34680: RR42_RS34680 - short-chain dehydrogenase, at 3,221,037 to 3,221,753
_RS34680
RR42_RS34685: RR42_RS34685 - catechol 1,2-dioxygenase, at 3,221,829 to 3,222,695
_RS34685
RR42_RS34690: RR42_RS34690 - permease, at 3,222,906 to 3,223,622
_RS34690
RR42_RS34695: RR42_RS34695 - hypothetical protein, at 3,223,947 to 3,224,699
_RS34695
RR42_RS34700: RR42_RS34700 - hypothetical protein, at 3,224,750 to 3,225,715
_RS34700
Group
Condition
RR42
_RS34680
RR42
_RS34685
RR42
_RS34690
RR42
_RS34695
RR42
_RS34700
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.6
-1.4
+0.2
-0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.8
-0.3
-1.5
+0.4
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-2.9
+0.3
+0.6
-0.2
-0.1
stress
R2A with Chloride 300 mM
-0.6
-1.1
-0.1
+0.0
-0.3
stress
R2A with copper (II) chloride 0.25 mM
-0.7
-0.7
-0.2
+0.0
-0.2
stress
R2A with Chlorite 4 mM
-1.1
+0.0
+0.2
-0.2
-0.5
carbon source
L-Leucine (C)
-1.6
-0.1
-0.3
-0.0
+0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-1.2
-0.2
+0.5
-0.1
-0.4
carbon source
Suberic (C)
-1.5
+0.2
+0.5
+0.2
-0.8
carbon source
Disodium Glutarate (C)
-0.8
+0.5
-0.9
-0.0
+0.1
carbon source
pyruvate (C)
-0.2
-0.2
-1.0
+0.2
+0.2
carbon source
propionate (C)
-1.3
+0.1
+0.3
+0.0
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.7
+0.3
+0.4
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.5
+0.6
-0.0
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.8
+0.2
-0.3
+0.0
+0.7
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.6
+0.3
-0.5
-0.1
carbon source
adipate (C)
+0.7
+0.3
-0.7
+0.2
-0.6
carbon source
4-Hydroxybenzoic Acid (C)
+1.0
-0.9
-0.5
+0.0
+0.3
carbon source
Valeric (C)
-0.5
+0.7
+0.6
-0.5
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
+0.0
+0.6
+0.6
+0.0
carbon source
Azelaic (C)
-0.4
+0.1
+1.1
-0.0
-0.3
carbon source
succinate (C)
+0.6
+0.2
+0.4
-0.1
-0.5
carbon source
Octanoic (C)
+0.8
+0.6
-0.6
-0.1
+0.0
carbon source
a-Ketoglutaric (C)
+1.0
-0.3
+0.3
-0.2
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
+0.5
+0.8
-0.2
-0.2
+0.4
stress
R2A with Zinc 0.1 mM
+1.0
-0.2
+0.9
-0.3
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.5
-0.3
+0.3
+0.7
stress
R2A with Cisplatin 0.001 mg/ml
+1.4
-0.8
+1.1
+0.3
-0.3
stress
R2A with A22 0.01 mg/ml
+1.1
-0.2
+0.8
+0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.1
+0.1
+1.0
+0.3
+0.3
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