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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34545 and RR42_RS34550 are separated by 564 nucleotides
RR42_RS34550 and RR42_RS34555 are separated by 443 nucleotides
RR42_RS34555 and RR42_RS34560 are separated by 322 nucleotides
RR42_RS34560 and RR42_RS34565 are separated by 198 nucleotides
RR42_RS34545: RR42_RS34545 - type IV secretion protein Rhs, at 3,189,547 to 3,191,820
_RS34545
RR42_RS34550: RR42_RS34550 - hypothetical protein, at 3,192,385 to 3,194,847
_RS34550
RR42_RS34555: RR42_RS34555 - hypothetical protein, at 3,195,291 to 3,195,872
_RS34555
RR42_RS34560: RR42_RS34560 - UTP--glucose-1-phosphate uridylyltransferase, at 3,196,195 to 3,197,067
_RS34560
RR42_RS34565: RR42_RS34565 - GDP-mannose mannosyl hydrolase, at 3,197,266 to 3,197,718
_RS34565
Group
Condition
RR42
_RS34545
RR42
_RS34550
RR42
_RS34555
RR42
_RS34560
RR42
_RS34565
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.2
-1.0
+0.3
-0.5
carbon source
L-Histidine (C)
-0.0
-0.1
-0.4
+0.1
-0.7
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.1
-0.1
+0.5
-1.1
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.0
-0.3
+0.3
-0.4
stress
R2A with sodium fluoride 100 mM
-0.3
-0.1
+0.4
-0.1
-0.5
carbon source
succinate (C)
+0.1
-0.1
+0.2
-0.0
-0.8
lb
LB
-0.4
-0.5
-0.4
-0.0
+0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.1
-0.4
+0.3
-0.5
carbon source
L-Alanine (C)
-0.4
-0.1
+0.0
+0.4
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.1
-0.5
+0.2
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.1
-0.2
+0.5
-0.5
nitrogen source
L-Phenylalanine (N)
+0.2
+0.3
-0.0
-0.0
-0.8
stress
R2A with Chloride 300 mM
-0.4
-0.0
-0.4
+0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.1
-0.5
-0.1
+0.5
carbon source
L-Lactate (C)
-0.1
-0.1
-0.4
-0.1
+0.6
carbon source
L-Alanine (C)
-0.0
-0.0
-0.7
+0.1
+0.6
carbon source
D-Gluconic Acid (C)
-0.2
-0.0
-0.5
+0.1
+0.6
carbon source
Heptanoic (C)
+0.2
-0.2
+0.5
-0.5
+0.0
carbon source
L-Tryptophan (C)
-0.2
+0.1
-0.6
-0.0
+0.9
nitrogen source
L-Glutamine (N)
-0.4
+0.1
+0.2
+0.5
+0.1
nitrogen source
Glucuronamide (N)
+0.2
+0.1
-0.3
+0.2
+0.5
nitrogen source
L-Asparagine (N)
-0.2
+0.1
+0.1
-0.1
+1.0
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.0
+0.7
-0.3
+0.4
carbon source
Azelaic (C)
+0.1
-0.0
+0.2
-0.3
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.0
+0.0
-0.2
+0.9
carbon source
L-Glutamine (C)
+0.0
-0.0
+0.1
+0.5
+0.6
carbon source
Heptanoic (C)
+0.2
+0.0
+0.4
+0.4
+0.3
carbon source
Protocatechuic Acid (C)
+0.1
-0.1
+0.4
-0.3
+1.2
carbon source
adipate (C)
-0.1
-0.0
+0.8
+0.2
+0.7
carbon source
Disodium Glutarate (C)
+0.4
-0.0
+0.8
+0.1
+0.5
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