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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34530 and RR42_RS34535 are separated by 0 nucleotides
RR42_RS34535 and RR42_RS34540 are separated by 4210 nucleotides
RR42_RS34540 and RR42_RS34545 are separated by 7 nucleotides
RR42_RS34545 and RR42_RS34550 are separated by 564 nucleotides
RR42_RS34530: RR42_RS34530 - hypothetical protein, at 3,181,130 to 3,182,371
_RS34530
RR42_RS34535: RR42_RS34535 - membrane protein, at 3,182,372 to 3,182,629
_RS34535
RR42_RS34540: RR42_RS34540 - hypothetical protein, at 3,186,840 to 3,189,539
_RS34540
RR42_RS34545: RR42_RS34545 - type IV secretion protein Rhs, at 3,189,547 to 3,191,820
_RS34545
RR42_RS34550: RR42_RS34550 - hypothetical protein, at 3,192,385 to 3,194,847
_RS34550
Group
Condition
RR42
_RS34530
RR42
_RS34535
RR42
_RS34540
RR42
_RS34545
RR42
_RS34550
lb
LB
+0.3
-5.6
-0.1
-0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-3.5
+0.0
-0.1
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-1.9
-0.0
-0.1
-0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.3
-1.2
-0.2
-0.1
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-1.9
+0.1
-0.1
-0.1
carbon source
adipate (C)
-0.1
-1.5
+0.1
-0.1
-0.0
carbon source
L-Leucine (C)
-0.1
-1.1
-0.1
-0.3
+0.0
carbon source
Valeric (C)
-0.4
-0.9
-0.2
+0.1
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
-1.1
-0.1
-0.1
-0.2
nitrogen source
L-Asparagine (N)
-0.2
-0.6
-0.1
-0.2
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.7
-0.2
-0.3
+0.1
carbon source
Heptanoic (C)
-0.2
-1.0
+0.0
+0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
-1.6
-0.0
+0.0
+0.1
carbon source
a-Ketoglutaric (C)
+0.2
-0.7
-0.1
-0.2
-0.0
nitrogen source
nitrate (N)
+0.2
-1.3
+0.1
+0.1
+0.0
carbon source
Hexanoic (C)
-0.5
-0.6
+0.0
+0.2
+0.1
stress
R2A with Chlorite 4 mM
+0.3
-0.9
-0.1
-0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.8
-0.1
+0.3
-0.0
carbon source
L-Asparagine (C)
-0.4
+0.6
-0.1
-0.1
-0.1
stress
R2A with A22 0.01 mg/ml
+0.3
-0.6
+0.1
+0.2
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.3
+1.1
-0.1
-0.3
-0.0
nitrogen source
L-Glutamine (N)
+0.4
+0.5
-0.2
-0.4
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+1.0
+0.2
-0.2
-0.2
carbon source
D-Gluconic Acid (C)
-0.3
+0.9
+0.0
-0.2
-0.0
carbon source
Disodium Glutarate (C)
-0.4
+1.0
-0.1
+0.2
+0.0
temperature
R2A 37C
+0.2
+0.9
-0.1
-0.2
+0.0
carbon source
adipate (C)
-0.2
+1.2
+0.0
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+1.2
-0.2
-0.1
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+1.1
-0.2
+0.4
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.8
+0.1
+0.0
+0.1
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RR42_RS34540
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