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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34370 and RR42_RS34375 are separated by 48 nucleotides
RR42_RS34375 and RR42_RS34380 are separated by 505 nucleotides
RR42_RS34380 and RR42_RS34385 are separated by 195 nucleotides
RR42_RS34385 and RR42_RS34390 are separated by 523 nucleotides
RR42_RS34370: RR42_RS34370 - membrane protein, at 3,135,580 to 3,136,119
_RS34370
RR42_RS34375: RR42_RS34375 - hypothetical protein, at 3,136,168 to 3,136,464
_RS34375
RR42_RS34380: RR42_RS34380 - dihydrolipoamide dehydrogenase, at 3,136,970 to 3,138,379
_RS34380
RR42_RS34385: RR42_RS34385 - glutathione peroxidase, at 3,138,575 to 3,139,306
_RS34385
RR42_RS34390: RR42_RS34390 - histidine kinase, at 3,139,830 to 3,143,138
_RS34390
Group
Condition
RR42
_RS34370
RR42
_RS34375
RR42
_RS34380
RR42
_RS34385
RR42
_RS34390
carbon source
Protocatechuic Acid (C)
+0.0
-0.0
-2.4
-1.7
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.5
-0.2
-1.6
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.0
-1.6
-1.0
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.2
-0.9
-1.5
+0.3
carbon source
Protocatechuic Acid (C)
+0.2
+0.3
-1.9
-1.1
+0.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.2
-0.6
-1.1
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
-0.2
-0.7
-1.4
+0.3
nitrogen source
D-Alanine (N)
-0.2
-0.2
-0.3
-0.1
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
-0.3
-0.2
-0.4
-0.1
stress
R2A with Zinc 0.1 mM
-0.4
-0.5
-0.3
+0.3
+0.1
nitrogen source
L-Isoleucine (N)
-0.2
-0.2
+0.2
-0.4
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
-0.1
-0.2
-0.4
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.1
-0.4
-0.5
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.2
-0.1
+0.2
-0.2
lb
LB
+0.6
+0.1
-0.6
-0.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.4
-0.0
-0.6
+0.2
carbon source
succinate (C)
+0.3
+0.2
-0.5
-0.2
+0.1
carbon source
L-Tryptophan (C)
-0.3
+0.2
+0.2
-0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
+0.1
-0.1
-0.7
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-0.3
+0.0
-0.1
+0.2
carbon source
Hexanoic (C)
+0.3
+0.1
-0.3
+0.3
-0.1
stress
R2A with Chlorite 4 mM
+0.4
+0.2
+0.0
-0.3
-0.2
carbon source
Disodium Glutarate (C)
+0.6
+0.1
-0.3
+0.1
-0.1
carbon source
butyrate (C)
-0.1
-0.1
+0.2
+0.3
+0.1
carbon source
adipate (C)
+0.4
+0.1
-0.3
+0.4
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.2
-0.4
+0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.3
-0.2
-0.2
+0.3
carbon source
Octanoic (C)
+0.3
+0.2
-0.1
+0.3
+0.0
nitrogen source
L-Tryptophan (N)
-0.1
+0.3
-0.0
+0.4
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.3
+0.3
+0.3
+0.1
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