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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34335 and RR42_RS34340 are separated by 305 nucleotides
RR42_RS34340 and RR42_RS34345 are separated by 244 nucleotides
RR42_RS34345 and RR42_RS34350 are separated by 45 nucleotides
RR42_RS34350 and RR42_RS34355 are separated by 78 nucleotides
RR42_RS34335: RR42_RS34335 - hypothetical protein, at 3,130,573 to 3,130,815
_RS34335
RR42_RS34340: RR42_RS34340 - acetyltransferase, at 3,131,121 to 3,131,549
_RS34340
RR42_RS34345: RR42_RS34345 - GTP cyclohydrolase, at 3,131,794 to 3,132,519
_RS34345
RR42_RS34350: RR42_RS34350 - blue light sensor protein, at 3,132,565 to 3,133,008
_RS34350
RR42_RS34355: RR42_RS34355 - hydratase, at 3,133,087 to 3,133,884
_RS34355
Group
Condition
RR42
_RS34335
RR42
_RS34340
RR42
_RS34345
RR42
_RS34350
RR42
_RS34355
stress
R2A with Vancomycin 0.5 mg/ml
-1.3
-0.4
+0.0
-0.2
-0.3
carbon source
Protocatechuic Acid (C)
-0.3
-0.5
-0.1
-0.4
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
-0.4
+0.0
-0.3
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.5
-0.1
+0.0
-0.7
-0.2
nitrogen source
L-Glutamine (N)
-1.0
+0.1
-0.4
-0.2
+0.2
carbon source
Valeric (C)
-0.9
-0.2
-0.2
-0.0
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
-0.4
-0.0
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-1.1
+0.0
+0.1
-0.4
nitrogen source
L-Phenylalanine (N)
-0.6
+0.3
-0.7
-0.1
-0.2
carbon source
L-Phenylalanine (C)
-0.5
+0.1
-0.6
-0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
-0.3
+0.1
-0.0
+0.1
carbon source
Hexanoic (C)
-0.7
-0.4
-0.1
+0.3
+0.1
nitrogen source
casaminos (N)
-0.5
+0.1
-0.4
-0.4
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
-0.5
+0.2
-0.5
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.5
-0.8
+0.4
+0.2
+0.0
r2a
R2A
-0.3
-0.5
+0.6
-0.2
-0.2
stress
R2A with Chloride 300 mM
+0.3
-0.2
+0.3
-0.4
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-1.1
-0.1
+0.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.6
+0.4
-0.2
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.3
+0.4
-0.5
-0.1
carbon source
Ethanol (C)
+0.8
-0.2
+0.0
-0.2
-0.3
nitrogen source
L-Tryptophan (N)
-0.2
-0.3
+0.3
+0.5
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.5
+0.1
+0.1
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.8
-0.1
+0.3
-0.2
-0.3
carbon source
adipate (C)
-0.3
+1.1
-0.3
+0.0
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
-0.1
+0.1
+0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.5
+0.4
+0.3
+0.1
lb
LB
+1.4
+0.2
-0.1
-0.5
+0.0
carbon source
L-Asparagine (C)
+0.9
-0.0
+0.2
-0.1
+0.3
carbon source
adipate (C)
+0.7
+1.0
-0.4
+0.2
+0.3
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