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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34325 and RR42_RS34330 are separated by 384 nucleotides
RR42_RS34330 and RR42_RS34335 are separated by 1292 nucleotides
RR42_RS34335 and RR42_RS34340 are separated by 305 nucleotides
RR42_RS34340 and RR42_RS34345 are separated by 244 nucleotides
RR42_RS34325: RR42_RS34325 - hypothetical protein, at 3,128,363 to 3,128,671
_RS34325
RR42_RS34330: RR42_RS34330 - hypothetical protein, at 3,129,056 to 3,129,280
_RS34330
RR42_RS34335: RR42_RS34335 - hypothetical protein, at 3,130,573 to 3,130,815
_RS34335
RR42_RS34340: RR42_RS34340 - acetyltransferase, at 3,131,121 to 3,131,549
_RS34340
RR42_RS34345: RR42_RS34345 - GTP cyclohydrolase, at 3,131,794 to 3,132,519
_RS34345
Group
Condition
RR42
_RS34325
RR42
_RS34330
RR42
_RS34335
RR42
_RS34340
RR42
_RS34345
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.5
-1.3
-0.4
+0.0
carbon source
Valeric (C)
-0.1
-0.6
-0.9
-0.2
-0.2
nitrogen source
L-Glutamine (N)
-0.4
-0.2
-1.0
+0.1
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.1
-1.0
-0.4
+0.0
carbon source
Protocatechuic Acid (C)
-1.0
+0.1
-0.3
-0.5
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.5
-0.1
-0.7
-0.4
-0.0
stress
R2A with Cephalothin 0.25 mg/ml
-0.3
-0.4
-0.4
-0.3
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.4
-0.9
-0.3
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
-0.7
-0.3
-0.5
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.6
-0.4
-0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.5
-0.1
-1.1
+0.0
nitrogen source
L-Phenylalanine (N)
-0.1
+0.2
-0.6
+0.3
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
+0.1
-0.0
-0.6
+0.4
carbon source
Hexanoic (C)
-0.2
+0.6
-0.7
-0.4
-0.1
r2a
R2A
-0.8
+0.2
-0.3
-0.5
+0.6
nitrogen source
Glucuronamide (N)
-0.2
+0.3
-0.8
+0.2
-0.2
carbon source
Pimelic (C)
-0.3
-0.4
-0.4
+0.6
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.2
+0.3
-1.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-0.4
-0.6
+0.5
+0.1
carbon source
adipate (C)
-0.6
-0.1
-0.3
+1.1
-0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.3
-0.5
-0.8
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
+0.7
+0.5
-0.5
-0.3
-0.0
lb
LB
-0.4
-0.7
+1.4
+0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.2
+0.8
-0.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.4
+0.4
+0.2
-0.3
+0.4
carbon source
adipate (C)
-0.3
-0.5
+0.7
+1.0
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
-0.2
+0.3
-0.5
+0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
+0.5
+0.4
-0.5
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.6
+0.6
-0.1
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.6
+0.9
-0.2
+0.3
+0.1
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