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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34115 and RR42_RS34120 are separated by 24 nucleotides
RR42_RS34120 and RR42_RS34125 are separated by 24 nucleotides
RR42_RS34125 and RR42_RS34130 are separated by 95 nucleotides
RR42_RS34130 and RR42_RS34135 are separated by 142 nucleotides
RR42_RS34115: RR42_RS34115 - hypothetical protein, at 3,083,448 to 3,083,648
_RS34115
RR42_RS34120: RR42_RS34120 - hypothetical protein, at 3,083,673 to 3,084,095
_RS34120
RR42_RS34125: RR42_RS34125 - NADPH:quinone reductase, at 3,084,120 to 3,085,133
_RS34125
RR42_RS34130: RR42_RS34130 - LysR family transcriptional regulator, at 3,085,229 to 3,086,158
_RS34130
RR42_RS34135: RR42_RS34135 - hypothetical protein, at 3,086,301 to 3,086,678
_RS34135
Group
Condition
RR42
_RS34115
RR42
_RS34120
RR42
_RS34125
RR42
_RS34130
RR42
_RS34135
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.2
-0.6
-0.0
-0.3
carbon source
succinate (C)
-0.9
-0.1
+0.0
-0.5
+0.0
carbon source
propionate (C)
-1.0
-0.1
-0.0
-0.3
-0.0
nitrogen source
L-Phenylalanine (N)
-0.6
-0.1
-0.1
-0.2
-0.2
nitrogen source
L-Threonine (N)
-0.8
-0.1
+0.3
-0.2
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-1.0
-0.1
-0.2
+0.2
+0.0
carbon source
Azelaic (C)
+0.3
-0.3
-0.3
-0.1
-0.5
carbon source
Dodecandioic (C)
-0.7
+0.1
+0.1
-0.3
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.1
+0.2
-0.4
-0.2
carbon source
D-Fructose (C)
-0.5
-0.3
+0.3
-0.0
-0.1
lb
LB
+0.5
-0.6
+0.2
-0.7
+0.1
carbon source
a-Ketoglutaric (C)
-0.7
+0.0
+0.3
-0.1
+0.1
nitrogen source
L-Leucine (N)
+0.7
-0.2
+0.0
-0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.0
+0.2
+0.7
-0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.3
-0.1
+0.2
+0.4
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
-0.2
+0.3
-0.1
+0.0
carbon source
Protocatechuic Acid (C)
+0.0
+0.3
+0.4
+0.3
-0.3
carbon source
L-Malic (C)
+0.4
+0.3
-0.2
+0.3
+0.2
nitrogen source
L-Citrulline (N)
+1.1
+0.1
-0.1
+0.0
-0.1
carbon source
Heptanoic (C)
+0.2
+0.3
+0.7
+0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
+0.2
-0.0
+0.3
-0.1
carbon source
L-Threonine (C)
+0.8
+0.2
-0.0
+0.0
+0.1
carbon source
Protocatechuic Acid (C)
+0.4
+0.1
+0.4
+0.4
-0.1
stress
R2A with nitrate 200 mM
+0.7
+0.3
+0.1
+0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.6
-0.1
+0.4
+0.4
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.8
+0.1
+0.2
+0.3
+0.0
carbon source
L-Asparagine (C)
+0.5
+0.3
+0.1
+0.4
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.8
-0.1
+0.3
+0.5
+0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.5
+0.3
+0.3
+0.0
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.0
+0.2
+0.5
+0.2
-0.1
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