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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34050 and RR42_RS34055 are separated by 8 nucleotides
RR42_RS34055 and RR42_RS34060 are separated by 135 nucleotides
RR42_RS34060 and RR42_RS34065 are separated by 115 nucleotides
RR42_RS34065 and RR42_RS34070 are separated by 56 nucleotides
RR42_RS34050: RR42_RS34050 - helicase, at 3,069,237 to 3,069,635
_RS34050
RR42_RS34055: RR42_RS34055 - NADH oxidase, at 3,069,644 to 3,070,894
_RS34055
RR42_RS34060: RR42_RS34060 - alpha/beta hydrolase, at 3,071,030 to 3,071,893
_RS34060
RR42_RS34065: RR42_RS34065 - quinone oxidoreductase, at 3,072,009 to 3,072,992
_RS34065
RR42_RS34070: RR42_RS34070 - NADPH:quinone oxidoreductase, at 3,073,049 to 3,074,050
_RS34070
Group
Condition
RR42
_RS34050
RR42
_RS34055
RR42
_RS34060
RR42
_RS34065
RR42
_RS34070
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
-0.2
-1.7
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.3
-2.1
+0.2
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.1
-1.3
+0.1
-0.4
stress
R2A with nitrate 150 mM
+0.1
-0.2
-0.8
-0.3
-0.1
carbon source
L-Lactate (C)
+0.3
-0.0
-1.6
+0.1
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.2
-1.5
+0.1
+0.5
carbon source
L-Tryptophan (C)
-0.4
-0.1
-0.8
+0.0
+0.2
carbon source
propionate (C)
-0.2
+0.0
-1.3
+0.1
+0.2
stress
R2A with A22 0.01 mg/ml
+0.3
-0.2
-0.6
-0.1
-0.3
nitrogen source
L-Valine (N)
-0.2
+0.0
-1.0
+0.1
+0.3
nitrogen source
Glucuronamide (N)
-0.1
-0.1
-0.5
-0.3
+0.4
carbon source
L-Alanine (C)
+0.1
-0.2
-0.8
+0.1
+0.3
nitrogen source
L-Glutamine (N)
+0.4
+0.2
-0.7
-0.0
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.2
+1.1
+0.0
-0.2
carbon source
Ethanol (C)
+0.4
-0.0
-0.7
+0.1
+0.3
nitrogen source
nitrite (N)
-0.5
-0.0
+0.9
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
-0.6
-0.1
+0.9
-0.2
+0.1
carbon source
L-Asparagine (C)
+0.3
+0.2
-0.6
+0.2
+0.2
carbon source
Protocatechuic Acid (C)
-0.3
+0.1
+0.8
-0.0
-0.3
nitrogen source
L-Serine (N)
+0.7
+0.0
-0.9
+0.2
+0.4
nitrogen source
L-Lysine (N)
+0.3
-0.0
-0.6
+0.3
+0.4
nitrogen source
L-Serine (N)
-0.5
+0.1
+0.7
-0.1
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.4
+0.7
-0.0
+0.1
nitrogen source
L-Tryptophan (N)
-0.2
+0.2
+0.7
-0.1
+0.2
carbon source
Azelaic (C)
-0.1
-0.0
+1.2
-0.2
+0.0
nitrogen source
casaminos (N)
-0.3
-0.0
+0.4
+0.3
+0.5
carbon source
Hexanoic (C)
-0.0
-0.2
+0.7
+0.2
+0.4
carbon source
adipate (C)
+0.2
+0.1
+0.8
+0.2
-0.2
carbon source
Heptanoic (C)
+0.2
+0.3
+0.8
+0.0
+0.4
carbon source
Octanoic (C)
+0.2
-0.0
+1.3
+0.3
+0.1
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