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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS34025 and RR42_RS34030 are separated by 713 nucleotides
RR42_RS34030 and RR42_RS34035 are separated by 132 nucleotides
RR42_RS34035 and RR42_RS34040 are separated by 53 nucleotides
RR42_RS34040 and RR42_RS34045 are separated by 81 nucleotides
RR42_RS34025: RR42_RS34025 - bacteriocin-protection protein, at 3,064,286 to 3,064,855
_RS34025
RR42_RS34030: RR42_RS34030 - TetR family transcriptional regulator, at 3,065,569 to 3,066,198
_RS34030
RR42_RS34035: RR42_RS34035 - N-ethylmaleimide reductase, at 3,066,331 to 3,067,413
_RS34035
RR42_RS34040: RR42_RS34040 - AraC family transcriptional regulator, at 3,067,467 to 3,068,255
_RS34040
RR42_RS34045: RR42_RS34045 - alpha/beta hydrolase, at 3,068,337 to 3,069,182
_RS34045
Group
Condition
RR42
_RS34025
RR42
_RS34030
RR42
_RS34035
RR42
_RS34040
RR42
_RS34045
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.3
-0.1
-0.3
-0.5
carbon source
D-Fructose (C)
-0.1
-0.2
-0.2
-0.2
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
-0.2
+0.1
-0.2
-0.2
stress
R2A with Zinc 0.1 mM
+0.1
-0.4
+0.0
-0.1
-0.3
nitrogen source
L-Tryptophan (N)
-0.4
-0.2
-0.2
-0.1
+0.1
nitrogen source
L-Leucine (N)
-0.6
-0.0
-0.0
-0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.1
-0.0
+0.2
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-0.1
+0.2
-0.0
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
+0.1
+0.1
-0.4
-0.2
carbon source
L-Tryptophan (C)
-0.5
+0.0
-0.2
+0.3
-0.1
lb
LB
-0.3
+0.0
-0.2
-0.2
+0.3
carbon source
Azelaic (C)
+0.3
-0.1
-0.1
-0.2
-0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.3
+0.1
-0.4
-0.1
carbon source
Suberic (C)
+0.2
+0.2
-0.2
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.2
-0.4
+0.2
-0.2
carbon source
Heptanoic (C)
+0.4
+0.1
-0.1
-0.1
-0.4
carbon source
Protocatechuic Acid (C)
+0.3
+0.2
-0.3
-0.0
-0.2
carbon source
Disodium Glutarate (C)
+0.2
+0.1
-0.3
+0.3
-0.2
carbon source
Disodium Glutarate (C)
+0.2
+0.3
-0.2
+0.1
-0.2
nitrogen source
L-Glutamine (N)
+0.2
-0.4
-0.1
+0.4
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.5
+0.3
-0.2
-0.2
carbon source
succinate (C)
+0.4
+0.3
-0.1
-0.1
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.0
-0.2
+0.5
-0.1
carbon source
Hexanoic (C)
+0.6
-0.1
+0.0
+0.2
-0.2
nitrogen source
Glucuronamide (N)
+0.3
-0.1
+0.1
+0.3
-0.0
temperature
R2A 37C
+0.2
-0.1
+0.2
+0.3
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.8
-0.5
+0.2
+0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.7
-0.0
+0.2
-0.2
carbon source
L-Asparagine (C)
+0.2
+0.2
+0.2
+0.2
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.4
+0.1
+0.2
-0.0
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