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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33905 and RR42_RS33910 are separated by 118 nucleotides
RR42_RS33910 and RR42_RS33915 are separated by 41 nucleotides
RR42_RS33915 and RR42_RS33920 are separated by 49 nucleotides
RR42_RS33920 and RR42_RS33925 are separated by 129 nucleotides
RR42_RS33905: RR42_RS33905 - transporter, at 3,033,946 to 3,036,018
_RS33905
RR42_RS33910: RR42_RS33910 - LysR family transcriptional regulator, at 3,036,137 to 3,037,030
_RS33910
RR42_RS33915: RR42_RS33915 - DNA-binding protein, at 3,037,072 to 3,037,398
_RS33915
RR42_RS33920: RR42_RS33920 - LysR family transcriptional regulator, at 3,037,448 to 3,038,350
_RS33920
RR42_RS33925: RR42_RS33925 - naphthalene 1,2-dioxygenase, at 3,038,480 to 3,039,466
_RS33925
Group
Condition
RR42
_RS33905
RR42
_RS33910
RR42
_RS33915
RR42
_RS33920
RR42
_RS33925
carbon source
Suberic (C)
+0.1
-1.1
+0.1
-1.1
+0.2
carbon source
L-Lactate (C)
-0.2
-0.6
-0.3
-0.3
-0.1
carbon source
adipate (C)
-0.2
-0.6
-0.3
-0.2
-0.1
carbon source
D-Lactate (C)
+0.0
-0.3
-0.2
-0.6
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-1.4
-0.3
+0.0
+0.2
carbon source
succinate (C)
+0.1
-1.3
+0.3
-0.2
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.9
-0.2
-0.3
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.5
-0.4
+0.2
-0.1
nitrogen source
D-Alanine (N)
-0.2
+0.2
-0.4
-0.6
+0.1
carbon source
D,L-Lactate (C)
-0.0
-0.5
+0.2
-0.6
+0.1
carbon source
Dodecandioic (C)
-0.0
-0.2
+0.4
-0.4
-0.4
stress
R2A with Zinc 0.1 mM
-0.3
-0.4
+0.3
-0.4
+0.1
carbon source
Azelaic (C)
-0.1
-0.7
+0.0
+0.4
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.3
-0.7
-0.2
-0.3
carbon source
pyruvate (C)
-0.1
+0.5
-0.0
-0.4
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
+0.4
-0.2
-0.3
+0.1
r2a
R2A
-0.1
+0.6
-0.4
-0.4
-0.1
carbon source
L-Histidine (C)
-0.3
+0.3
+0.2
-0.3
-0.3
carbon source
succinate (C)
-0.3
+0.3
+0.2
-0.2
-0.5
nitrogen source
L-Leucine (N)
-0.0
+0.2
+0.5
-0.7
-0.3
carbon source
L-Phenylalanine (C)
+0.2
+0.5
+0.0
-0.6
-0.4
carbon source
L-Alanine (C)
-0.1
+0.6
+0.4
-0.3
-0.2
stress
R2A with nitrate 200 mM
-0.1
+0.6
+0.3
-0.5
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.6
+0.7
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.7
-0.4
-0.0
-0.0
nitrogen source
Glucuronamide (N)
+0.2
+1.0
+0.2
-0.4
-0.3
lb
LB
-0.1
+0.9
+0.5
-0.1
-0.2
nitrogen source
L-Tryptophan (N)
+0.1
+0.8
+0.3
-0.3
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+0.9
+0.3
-0.2
+0.1
nitrogen source
L-Glutamine (N)
+0.1
+1.1
+0.3
-0.4
+0.2
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