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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33875 and RR42_RS33880 are separated by 28 nucleotides
RR42_RS33880 and RR42_RS33885 are separated by 130 nucleotides
RR42_RS33885 and RR42_RS33890 are separated by 36 nucleotides
RR42_RS33890 and RR42_RS33895 overlap by 4 nucleotides
RR42_RS33875: RR42_RS33875 - alpha-ketoglutarate permease, at 3,027,995 to 3,029,305
_RS33875
RR42_RS33880: RR42_RS33880 - serine dehydratase, at 3,029,334 to 3,030,278
_RS33880
RR42_RS33885: RR42_RS33885 - LysR family transcriptional regulator, at 3,030,409 to 3,031,335
_RS33885
RR42_RS33890: RR42_RS33890 - RND transporter, at 3,031,372 to 3,032,829
_RS33890
RR42_RS33895: RR42_RS33895 - membrane protein, at 3,032,826 to 3,033,743
_RS33895
Group
Condition
RR42
_RS33875
RR42
_RS33880
RR42
_RS33885
RR42
_RS33890
RR42
_RS33895
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.1
-0.4
+0.1
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.3
+0.1
-0.1
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.2
+0.1
-0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.0
-0.5
+0.2
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.0
-0.1
-0.2
-0.6
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.3
-0.8
-0.2
-0.2
r2a
R2A
-0.1
+0.2
-0.5
+0.1
-0.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
+0.2
-0.7
+0.0
-0.1
stress
R2A with Chloride 300 mM
+0.0
-0.1
-0.3
+0.2
-0.4
carbon source
Dodecandioic (C)
+0.0
+0.2
+0.1
-0.3
-0.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
-0.2
-0.3
+0.4
-0.1
stress
R2A with A22 0.01 mg/ml
+0.1
-0.2
-0.4
+0.2
-0.1
carbon source
L-Asparagine (C)
-0.0
+0.1
-0.6
+0.2
-0.1
lb
LB
-0.1
+0.3
-0.5
+0.3
-0.5
carbon source
Octanoic (C)
-0.2
-0.4
-0.0
-0.1
+0.3
nitrogen source
L-Glutamine (N)
+0.3
+0.1
-0.3
-0.4
-0.1
stress
R2A with Zinc 0.1 mM
-0.2
+0.1
-0.5
+0.2
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
-0.4
-0.3
+0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.3
+0.2
+0.3
-0.2
carbon source
Hexanoic (C)
+0.1
+0.1
-0.5
+0.1
+0.4
carbon source
Dodecandioic (C)
-0.2
+0.2
+0.2
-0.2
+0.2
carbon source
Octanoic (C)
+0.2
+0.0
+0.5
-0.2
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.4
+0.5
+0.2
+0.0
carbon source
succinate (C)
+0.2
-0.0
-0.1
-0.2
+0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.5
-0.3
+0.4
-0.2
carbon source
D-Lactate (C)
+0.2
+0.1
+0.3
+0.3
-0.2
nitrogen source
L-Threonine (N)
+0.2
+0.3
+0.2
+0.3
-0.3
carbon source
Disodium Glutarate (C)
+0.1
-0.1
+0.4
-0.1
+0.4
carbon source
Protocatechuic Acid (C)
+0.2
+0.2
+0.1
-0.3
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.2
+0.3
+0.5
+0.1
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RR42_RS33885
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