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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33800 and RR42_RS33805 are separated by 136 nucleotides
RR42_RS33805 and RR42_RS33810 are separated by 86 nucleotides
RR42_RS33810 and RR42_RS33815 are separated by 55 nucleotides
RR42_RS33815 and RR42_RS33820 are separated by 82 nucleotides
RR42_RS33800: RR42_RS33800 - cytochrome C552, at 3,013,133 to 3,013,807
_RS33800
RR42_RS33805: RR42_RS33805 - 2-aminoadipate aminotransferase, at 3,013,944 to 3,015,458
_RS33805
RR42_RS33810: RR42_RS33810 - NIPSNAP family containing protein, at 3,015,545 to 3,015,850
_RS33810
RR42_RS33815: RR42_RS33815 - isochorismatase, at 3,015,906 to 3,016,460
_RS33815
RR42_RS33820: RR42_RS33820 - arabinose transporter permease, at 3,016,543 to 3,017,736
_RS33820
Group
Condition
RR42
_RS33800
RR42
_RS33805
RR42
_RS33810
RR42
_RS33815
RR42
_RS33820
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.0
+0.5
-3.6
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.0
-0.2
-2.7
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.1
-0.3
-2.7
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.1
-0.2
-3.4
+0.3
temperature
R2A 23C
-0.2
-0.3
-0.0
-1.6
-0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.7
-0.0
-0.9
-0.4
-0.4
carbon source
Suberic (C)
-0.6
-0.2
-0.7
-0.4
-0.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.4
-0.3
-0.6
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.1
-0.4
-1.0
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.2
+0.2
-1.8
+0.2
carbon source
Heptanoic (C)
-0.4
-0.1
+0.2
-1.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.1
-1.8
+0.1
+0.3
lb
LB
-0.4
-0.5
+0.2
-0.3
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.3
-0.5
-1.3
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.3
+0.2
-2.0
+0.3
nitrogen source
casaminos (N)
-0.5
-0.4
-0.3
+0.5
-0.1
stress
R2A with Zinc 0.1 mM
-0.6
+0.1
-0.6
+0.5
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.3
-0.5
+0.9
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
-0.1
-0.6
+0.5
+0.1
carbon source
Azelaic (C)
-0.2
-0.2
-0.6
+0.5
+0.1
nitrogen source
L-Glutamine (N)
-0.2
-0.5
+0.5
+0.5
-0.5
carbon source
L-Asparagine (C)
+0.2
+0.4
+0.2
-0.5
-0.5
nitrogen source
D-Alanine (N)
-0.2
-0.3
+0.4
+0.7
-0.1
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
-0.3
+1.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.6
+0.3
+0.3
+0.1
-0.4
stress
R2A with A22 0.01 mg/ml
-0.3
+0.0
+0.2
+1.1
+0.2
nitrogen source
L-Leucine (N)
-0.0
-0.2
+0.4
+1.4
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.1
+0.1
+1.7
+0.0
carbon source
Protocatechuic Acid (C)
+0.5
+0.0
+0.1
+1.1
+0.1
carbon source
Protocatechuic Acid (C)
-0.2
+0.2
+0.1
+1.6
+0.2
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