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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33580 and RR42_RS33585 are separated by 290 nucleotides
RR42_RS33585 and RR42_RS33590 are separated by 104 nucleotides
RR42_RS33590 and RR42_RS33595 are separated by 11 nucleotides
RR42_RS33595 and RR42_RS33600 overlap by 8 nucleotides
RR42_RS33580: RR42_RS33580 - 3-hydroxyacyl-CoA dehydrogenase, at 2,962,136 to 2,963,050
_RS33580
RR42_RS33585: RR42_RS33585 - 3-keto-5-aminohexanoate cleavage protein, at 2,963,341 to 2,964,273
_RS33585
RR42_RS33590: RR42_RS33590 - cyclase, at 2,964,378 to 2,965,136
_RS33590
RR42_RS33595: RR42_RS33595 - hypothetical protein, at 2,965,148 to 2,965,522
_RS33595
RR42_RS33600: RR42_RS33600 - oxidoreductase, at 2,965,515 to 2,966,303
_RS33600
Group
Condition
RR42
_RS33580
RR42
_RS33585
RR42
_RS33590
RR42
_RS33595
RR42
_RS33600
lb
LB
-0.2
-0.2
-0.1
-0.8
-3.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.3
-0.0
-0.7
-1.9
carbon source
Protocatechuic Acid (C)
+0.4
-0.1
+0.1
-0.0
-3.4
carbon source
D,L-Lactate (C)
-0.0
+0.1
-0.3
-0.8
-1.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.2
-0.4
-0.5
-1.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+0.1
-0.1
-0.5
-1.8
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.3
-0.5
-1.3
+0.4
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.0
-0.9
+0.0
-0.6
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
-0.0
-0.5
-0.2
-0.7
stress
R2A with Zinc 0.1 mM
+0.2
+0.2
+0.1
-1.0
-0.9
carbon source
Trisodium citrate (C)
+0.2
-0.0
-0.1
-0.7
-0.7
nitrogen source
L-Isoleucine (N)
+0.1
-0.1
-0.0
-0.6
-0.8
carbon source
Heptanoic (C)
+0.1
+0.1
-0.2
-0.6
-0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
+0.2
-0.2
-1.3
+0.1
nitrogen source
L-Glutamine (N)
+0.5
+0.1
-0.1
-0.3
-1.0
nitrogen source
L-Phenylalanine (N)
-0.2
-0.1
-0.0
+0.4
-0.8
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-0.0
+0.1
-0.6
-0.6
r2a
R2A
-0.1
-0.1
+0.3
-0.8
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.1
+0.4
+0.1
-1.2
carbon source
L-Malic (C)
-0.2
+0.0
-0.1
-0.7
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
+0.3
+0.0
-1.1
+0.6
nitrogen source
L-Tryptophan (N)
+0.1
-0.0
+0.1
+0.7
-0.8
carbon source
Azelaic (C)
+0.1
+0.2
+0.0
-0.9
+0.7
nitrogen source
nitrite (N)
+0.3
-0.1
-0.3
-0.3
+0.6
stress
R2A with Chlorite 4 mM
+0.2
+0.2
+0.3
-0.6
+0.2
carbon source
adipate (C)
+0.4
+0.1
-0.1
-0.5
+0.4
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.1
-0.1
-0.2
+1.1
stress
R2A with nitrate 200 mM
-0.0
-0.3
-0.1
+0.7
+0.4
carbon source
adipate (C)
-0.4
-0.0
+0.1
-0.2
+1.3
carbon source
L-Proline (C)
-0.1
+0.0
-0.3
+0.6
+0.6
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