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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33555 and RR42_RS33560 are separated by 84 nucleotides
RR42_RS33560 and RR42_RS33565 are separated by 76 nucleotides
RR42_RS33565 and RR42_RS33570 are separated by 141 nucleotides
RR42_RS33570 and RR42_RS33575 are separated by 5424 nucleotides
RR42_RS33555: RR42_RS33555 - secretion protein HlyD, at 2,944,916 to 2,945,686
_RS33555
RR42_RS33560: RR42_RS33560 - transporter, at 2,945,771 to 2,947,279
_RS33560
RR42_RS33565: RR42_RS33565 - hypothetical protein, at 2,947,356 to 2,954,855
_RS33565
RR42_RS33570: RR42_RS33570 - sulfotransferase, at 2,954,997 to 2,955,827
_RS33570
RR42_RS33575: RR42_RS33575 - hypothetical protein, at 2,961,252 to 2,962,085
_RS33575
Group
Condition
RR42
_RS33555
RR42
_RS33560
RR42
_RS33565
RR42
_RS33570
RR42
_RS33575
carbon source
Pimelic (C)
-0.1
+0.1
+0.0
-0.0
-4.8
carbon source
adipate (C)
+0.0
+0.0
-0.0
-0.1
-3.0
nitrogen source
D-Alanine (N)
-0.1
+0.1
+0.1
+0.1
-2.9
carbon source
Disodium Glutarate (C)
-0.0
+0.1
-0.1
-0.2
-2.5
carbon source
Pimelic (C)
-0.2
+0.2
+0.0
-0.0
-2.7
nitrogen source
Glycine (N)
-0.2
-0.2
+0.1
-0.1
-2.0
nitrogen source
nitrite (N)
+0.0
+0.1
+0.1
+0.0
-2.6
carbon source
adipate (C)
-0.2
+0.1
-0.0
-0.0
-2.3
carbon source
D-Lactate (C)
+0.1
+0.2
-0.0
+0.3
-2.9
nitrogen source
L-Isoleucine (N)
+0.1
-0.1
+0.0
-0.1
-2.1
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
-0.1
-0.2
-1.8
nitrogen source
L-Glutamine (N)
-0.1
-0.1
-0.1
+0.1
-1.8
carbon source
Heptanoic (C)
+0.0
+0.1
+0.0
-0.2
-1.9
carbon source
a-Ketoglutaric (C)
+0.1
+0.2
+0.0
+0.0
-2.2
stress
R2A with sodium fluoride 100 mM
-0.0
+0.1
+0.0
+0.1
-2.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.0
+0.0
-0.2
-1.8
nitrogen source
L-Lysine (N)
+0.3
+0.1
+0.0
+0.1
-2.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
-0.0
-0.0
+0.2
-2.0
carbon source
Protocatechuic Acid (C)
+0.2
-0.0
-0.1
-0.4
-1.3
carbon source
L-Proline (C)
+0.2
+0.1
+0.0
+0.3
-2.2
carbon source
Dodecandioic (C)
+0.0
+0.2
-0.0
-0.1
-1.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.0
+0.0
+0.1
-1.6
carbon source
D,L-Lactate (C)
-0.2
+0.2
+0.1
-0.1
-1.5
carbon source
L-Tryptophan (C)
+0.2
-0.1
+0.0
+0.0
-1.7
carbon source
L-Malic (C)
+0.2
+0.0
-0.0
+0.2
-1.8
carbon source
L-Alanine (C)
+0.3
+0.0
+0.1
+0.1
-1.8
carbon source
a-Ketoglutaric (C)
+0.3
-0.0
+0.2
+0.3
-1.8
carbon source
Disodium Glutarate (C)
+0.3
+0.1
+0.0
+0.0
-1.6
carbon source
L-Histidine (C)
-0.2
+0.2
-0.0
+0.3
-1.3
nitrogen source
D-Alanine (N)
+0.1
+0.2
+0.1
+0.3
-1.5
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