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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33435 and RR42_RS33440 are separated by 34 nucleotides
RR42_RS33440 and RR42_RS33445 are separated by 131 nucleotides
RR42_RS33445 and RR42_RS33450 are separated by 72 nucleotides
RR42_RS33450 and RR42_RS33455 are separated by 22 nucleotides
RR42_RS33435: RR42_RS33435 - alkyl sulfatase, at 2,919,429 to 2,921,405
_RS33435
RR42_RS33440: RR42_RS33440 - LysR family transcriptional regulator, at 2,921,440 to 2,922,369
_RS33440
RR42_RS33445: RR42_RS33445 - haloacid dehalogenase, at 2,922,501 to 2,923,151
_RS33445
RR42_RS33450: RR42_RS33450 - alanine racemase, at 2,923,224 to 2,924,378
_RS33450
RR42_RS33455: RR42_RS33455 - endoribonuclease L-PSP, at 2,924,401 to 2,924,799
_RS33455
Group
Condition
RR42
_RS33435
RR42
_RS33440
RR42
_RS33445
RR42
_RS33450
RR42
_RS33455
nitrogen source
Glucuronamide (N)
-0.0
-0.7
-0.2
+0.1
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
-0.8
-0.0
+0.1
-1.0
carbon source
Protocatechuic Acid (C)
-0.1
-0.9
-0.1
+0.4
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.4
-0.2
-0.4
-0.5
carbon source
L-Histidine (C)
-0.1
-0.1
-0.0
+0.3
-1.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.7
+0.1
-0.2
-1.2
stress
R2A with A22 0.01 mg/ml
+0.0
-0.5
+0.2
+0.0
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
-0.9
-0.1
+0.2
+0.1
nitrogen source
L-Glutamine (N)
-0.2
-0.1
+0.1
+0.4
-0.7
nitrogen source
L-Citrulline (N)
+0.0
-0.7
+0.0
+0.4
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.0
+0.0
-0.8
+0.4
nitrogen source
Glycine (N)
-0.0
-0.6
-0.1
+0.2
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.5
+0.2
+0.5
-0.5
carbon source
Hexanoic (C)
-0.1
+0.4
+0.0
-0.7
+0.3
carbon source
pyruvate (C)
+0.0
+0.5
+0.0
+0.1
-0.7
carbon source
D-Lactate (C)
-0.0
+0.6
+0.2
-0.4
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.6
+0.1
-0.1
-0.5
nitrogen source
L-Serine (N)
-0.0
-0.6
+0.1
+0.5
+0.2
nitrogen source
casaminos (N)
-0.0
-0.5
-0.1
+0.2
+0.6
carbon source
Dodecandioic (C)
-0.0
-0.3
+0.1
-0.2
+0.7
carbon source
succinate (C)
-0.1
-0.3
-0.1
+0.2
+0.7
carbon source
Hexanoic (C)
-0.1
+0.0
-0.2
-0.2
+1.0
carbon source
Disodium Glutarate (C)
-0.2
-0.5
+0.4
-0.3
+1.0
carbon source
Valeric (C)
+0.0
+0.6
-0.0
-0.3
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.7
+0.2
+0.2
-0.3
carbon source
propionate (C)
-0.2
+0.1
+0.1
+0.1
+0.8
carbon source
Protocatechuic Acid (C)
-0.0
+0.6
-0.3
+0.5
+0.2
lb
LB
+0.1
-0.1
-0.1
+0.7
+0.4
carbon source
Heptanoic (C)
+0.1
-0.1
+0.2
-0.1
+0.9
carbon source
Azelaic (C)
-0.0
+0.2
+0.4
-0.1
+0.9
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