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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33385 and RR42_RS33390 are separated by 155 nucleotides
RR42_RS33390 and RR42_RS33395 are separated by 705 nucleotides
RR42_RS33395 and RR42_RS33400 are separated by 19 nucleotides
RR42_RS33400 and RR42_RS33405 are separated by 147 nucleotides
RR42_RS33385: RR42_RS33385 - XpsR family transcriptional regulator, at 2,904,504 to 2,905,238
_RS33385
RR42_RS33390: RR42_RS33390 - beta-Ala-Xaa dipeptidase, at 2,905,394 to 2,907,115
_RS33390
RR42_RS33395: RR42_RS33395 - peptidase S8, at 2,907,821 to 2,909,773
_RS33395
RR42_RS33400: RR42_RS33400 - hypothetical protein, at 2,909,793 to 2,910,293
_RS33400
RR42_RS33405: RR42_RS33405 - hypothetical protein, at 2,910,441 to 2,911,544
_RS33405
Group
Condition
RR42
_RS33385
RR42
_RS33390
RR42
_RS33395
RR42
_RS33400
RR42
_RS33405
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.1
-0.1
-0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
-0.4
+0.0
-0.3
+0.2
carbon source
succinate (C)
-1.0
-0.1
-0.1
+0.0
+0.3
stress
R2A with Chloride 300 mM
-1.2
-0.1
-0.0
+0.1
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.0
-0.1
-0.3
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.4
-0.1
-0.4
+0.1
carbon source
L-Malic (C)
-0.1
+0.2
-0.0
-0.4
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.1
-0.2
+0.1
+0.6
nitrogen source
casaminos (N)
+0.3
+0.2
+0.1
+0.3
-0.3
carbon source
Azelaic (C)
+0.4
+0.1
-0.1
-0.2
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.6
+0.2
-0.0
+0.1
-0.2
stress
R2A with Cobalt chloride 0.5 mM
+1.1
+0.1
-0.2
-0.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
+0.0
+0.1
+0.5
+0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.5
+0.1
+0.0
-0.2
+0.4
carbon source
Octanoic (C)
+0.8
-0.1
+0.0
+0.1
+0.0
stress
R2A with A22 0.01 mg/ml
+0.5
-0.1
-0.1
+0.2
+0.3
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-0.0
-0.0
+0.6
stress
R2A with Nickel (II) chloride 0.5 mM
+1.3
+0.1
-0.0
-0.1
-0.4
carbon source
adipate (C)
+0.7
-0.0
-0.0
+0.1
+0.2
nitrogen source
L-Glutamine (N)
+0.3
+0.3
-0.0
+0.1
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
+0.2
+0.1
-0.0
+0.4
carbon source
D-Lactate (C)
+0.5
-0.1
-0.0
+0.1
+0.7
stress
R2A with Cobalt chloride 0.3 mM
+0.9
+0.3
-0.1
+0.1
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+1.0
+0.1
+0.0
+0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+1.3
+0.2
+0.0
-0.0
-0.1
stress
R2A with nitrate 150 mM
+1.2
+0.0
-0.0
+0.2
+0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.5
+0.3
+0.0
+0.2
+0.5
stress
R2A with nitrate 200 mM
+1.2
+0.2
-0.0
+0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+1.5
+0.2
+0.0
-0.2
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+1.9
+0.1
-0.0
+0.3
+0.3
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RR42_RS33395
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RR42_RS33400
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