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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33360 and RR42_RS33365 are separated by 335 nucleotides
RR42_RS33365 and RR42_RS33370 are separated by 92 nucleotides
RR42_RS33370 and RR42_RS33375 are separated by 93 nucleotides
RR42_RS33375 and RR42_RS33380 are separated by 34 nucleotides
RR42_RS33360: RR42_RS33360 - membrane protein, at 2,899,240 to 2,899,866
_RS33360
RR42_RS33365: RR42_RS33365 - hypothetical protein, at 2,900,202 to 2,900,936
_RS33365
RR42_RS33370: RR42_RS33370 - AraC family transcriptional regulator, at 2,901,029 to 2,901,844
_RS33370
RR42_RS33375: RR42_RS33375 - cupin, at 2,901,938 to 2,902,342
_RS33375
RR42_RS33380: RR42_RS33380 - MBL fold metallo-hydrolase, at 2,902,377 to 2,903,453
_RS33380
Group
Condition
RR42
_RS33360
RR42
_RS33365
RR42
_RS33370
RR42
_RS33375
RR42
_RS33380
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.1
+0.2
-1.0
-0.1
carbon source
Protocatechuic Acid (C)
-0.1
-0.1
-0.0
-0.9
+0.1
carbon source
Dodecandioic (C)
+0.1
-0.1
-0.1
-1.1
+0.2
carbon source
L-Histidine (C)
-0.3
-0.1
-0.0
-0.5
+0.1
stress
R2A with Chlorite 4 mM
-0.5
-0.0
+0.1
-0.1
-0.3
carbon source
L-Proline (C)
-0.2
-0.1
-0.1
-0.5
+0.1
nitrogen source
Glycine (N)
-1.1
+0.0
+0.1
+0.2
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+0.1
-0.2
-0.5
-0.1
carbon source
L-Asparagine (C)
+0.1
-0.2
+0.2
-0.6
-0.1
nitrogen source
L-Glutamine (N)
+0.2
+0.1
-0.0
-0.7
+0.0
lb
LB
-0.0
+0.2
+0.1
-0.5
-0.2
carbon source
Hexanoic (C)
-0.3
+0.1
-0.1
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.2
-0.3
+0.1
-0.2
carbon source
Ethanol (C)
-0.5
-0.1
-0.0
+0.3
+0.3
carbon source
butyrate (C)
-0.3
-0.2
+0.1
+0.4
+0.1
nitrogen source
L-Valine (N)
-0.3
+0.0
-0.1
+0.3
+0.2
carbon source
Pimelic (C)
-0.0
-0.1
-0.2
+0.6
-0.1
carbon source
propionate (C)
-0.2
-0.1
+0.3
+0.5
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.0
-0.3
+0.5
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.1
-0.1
+0.5
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.0
+0.4
+0.3
+0.1
temperature
R2A 23C
-0.0
-0.1
-0.1
+0.6
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.0
-0.3
+0.7
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.0
+0.2
-0.1
+0.4
+0.3
carbon source
succinate (C)
-0.1
+0.2
+0.1
+0.7
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-0.2
+0.1
+0.7
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.1
+0.2
+0.4
-0.2
temperature
R2A 23C
+0.0
+0.1
+0.2
+0.6
+0.2
r2a
R2A
+0.0
+0.3
+0.1
+0.3
+0.4
nitrogen source
L-Serine (N)
+0.4
+0.3
+0.0
+0.3
+0.1
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