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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33355 and RR42_RS33360 are separated by 145 nucleotides
RR42_RS33360 and RR42_RS33365 are separated by 335 nucleotides
RR42_RS33365 and RR42_RS33370 are separated by 92 nucleotides
RR42_RS33370 and RR42_RS33375 are separated by 93 nucleotides
RR42_RS33355: RR42_RS33355 - membrane protein, at 2,898,510 to 2,899,094
_RS33355
RR42_RS33360: RR42_RS33360 - membrane protein, at 2,899,240 to 2,899,866
_RS33360
RR42_RS33365: RR42_RS33365 - hypothetical protein, at 2,900,202 to 2,900,936
_RS33365
RR42_RS33370: RR42_RS33370 - AraC family transcriptional regulator, at 2,901,029 to 2,901,844
_RS33370
RR42_RS33375: RR42_RS33375 - cupin, at 2,901,938 to 2,902,342
_RS33375
Group
Condition
RR42
_RS33355
RR42
_RS33360
RR42
_RS33365
RR42
_RS33370
RR42
_RS33375
carbon source
propionate (C)
-4.2
-0.3
-0.1
-0.0
-0.1
nitrogen source
L-Leucine (N)
-4.2
-0.1
-0.1
-0.1
+0.1
nitrogen source
L-Glutamine (N)
-3.9
+0.2
+0.1
-0.0
-0.7
nitrogen source
L-Asparagine (N)
-3.6
-0.5
-0.1
-0.0
+0.1
carbon source
D-Lactate (C)
-3.9
-0.2
-0.1
+0.2
-0.0
nitrogen source
Glycine (N)
-3.3
-1.1
+0.0
+0.1
+0.2
carbon source
D-Gluconic Acid (C)
-4.1
+0.2
-0.0
-0.0
+0.2
nitrogen source
L-Threonine (N)
-3.6
-0.1
-0.1
-0.1
+0.1
nitrogen source
D-Alanine (N)
-3.7
+0.2
-0.1
-0.0
-0.1
carbon source
propionate (C)
-4.2
-0.2
-0.1
+0.3
+0.5
nitrogen source
L-Phenylalanine (N)
-3.5
-0.4
-0.0
+0.2
+0.1
carbon source
L-Threonine (C)
-3.6
-0.1
-0.0
+0.1
+0.0
carbon source
L-Tryptophan (C)
-2.8
-0.2
-0.1
+0.0
-0.3
nitrogen source
L-Leucine (N)
-3.3
-0.0
-0.0
+0.1
-0.1
nitrogen source
L-Tryptophan (N)
-3.4
-0.2
-0.1
+0.2
+0.2
carbon source
succinate (C)
-3.3
-0.2
+0.1
+0.0
+0.1
carbon source
succinate (C)
-3.1
-0.0
-0.0
-0.2
+0.2
carbon source
L-Histidine (C)
-2.3
-0.3
-0.1
-0.0
-0.5
nitrogen source
D-Alanine (N)
-3.1
-0.1
+0.1
-0.0
+0.1
carbon source
L-Phenylalanine (C)
-3.4
-0.1
+0.0
+0.2
+0.4
carbon source
pyruvate (C)
-3.1
-0.3
-0.1
+0.0
+0.4
carbon source
Trisodium citrate (C)
-3.0
+0.0
-0.0
+0.1
-0.1
carbon source
L-Malic (C)
-3.1
-0.1
+0.1
-0.0
+0.3
carbon source
L-Asparagine (C)
-2.4
+0.1
-0.2
+0.2
-0.6
nitrogen source
nitrate (N)
-2.2
-0.2
-0.0
+0.0
-0.4
carbon source
L-Malic (C)
-2.9
-0.0
+0.0
+0.2
+0.1
carbon source
butyrate (C)
-2.3
-0.3
-0.2
+0.1
+0.4
carbon source
D-Fructose (C)
-2.5
-0.1
+0.1
-0.0
+0.2
carbon source
D-Lactate (C)
-2.6
+0.2
-0.1
+0.0
+0.4
nitrogen source
L-Serine (N)
-2.1
+0.4
+0.3
+0.0
+0.3
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