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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33275 and RR42_RS33280 are separated by 450 nucleotides
RR42_RS33280 and RR42_RS33285 are separated by 28 nucleotides
RR42_RS33285 and RR42_RS33290 are separated by 326 nucleotides
RR42_RS33290 and RR42_RS33295 are separated by 88 nucleotides
RR42_RS33275: RR42_RS33275 - hypothetical protein, at 2,880,584 to 2,880,874
_RS33275
RR42_RS33280: RR42_RS33280 - diguanylate cyclase, at 2,881,325 to 2,882,440
_RS33280
RR42_RS33285: RR42_RS33285 - membrane protein, at 2,882,469 to 2,882,930
_RS33285
RR42_RS33290: RR42_RS33290 - histidine kinase, at 2,883,257 to 2,885,233
_RS33290
RR42_RS33295: RR42_RS33295 - GNAT family acetyltransferase, at 2,885,322 to 2,885,783
_RS33295
Group
Condition
RR42
_RS33275
RR42
_RS33280
RR42
_RS33285
RR42
_RS33290
RR42
_RS33295
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-0.0
-0.3
-0.1
-0.2
carbon source
L-Asparagine (C)
-0.5
-0.2
-0.2
+0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.1
-0.4
-0.2
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.2
+0.2
-0.1
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.0
-0.4
+0.2
-0.1
stress
R2A with nitrate 200 mM
-0.4
+0.0
-0.2
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.2
+0.3
-0.6
-0.2
-0.1
carbon source
L-Leucine (C)
-0.3
-0.3
+0.2
+0.0
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.1
-0.1
-0.0
+0.2
carbon source
Azelaic (C)
+0.4
+0.3
-0.6
-0.2
-0.0
carbon source
L-Phenylalanine (C)
-0.4
+0.1
+0.3
+0.2
-0.1
carbon source
L-Lactate (C)
-0.3
-0.1
+0.4
+0.0
+0.1
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
-0.3
+0.1
+0.3
carbon source
adipate (C)
+0.3
+0.0
+0.2
-0.1
-0.2
carbon source
Hexanoic (C)
+0.2
+0.3
-0.4
+0.1
+0.0
stress
R2A with Chloride 300 mM
+0.1
-0.2
-0.1
+0.4
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.3
+0.2
+0.1
+0.1
carbon source
Protocatechuic Acid (C)
+0.4
+0.2
-0.0
-0.1
-0.1
nitrogen source
casaminos (N)
+0.2
+0.2
-0.3
+0.2
+0.1
carbon source
L-Tryptophan (C)
-0.0
-0.1
+0.6
+0.1
-0.1
carbon source
Heptanoic (C)
+0.3
+0.1
-0.3
+0.1
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.2
-0.2
+0.2
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.1
+0.5
+0.1
+0.0
carbon source
butyrate (C)
-0.2
-0.0
+0.5
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.1
+0.4
+0.0
+0.0
carbon source
Disodium Glutarate (C)
+0.5
+0.3
-0.3
+0.0
+0.2
nitrogen source
D-Alanine (N)
+0.3
+0.2
+0.2
+0.1
+0.1
carbon source
Pimelic (C)
+0.3
+0.0
+0.4
+0.1
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.1
+0.3
+0.6
-0.1
+0.2
nitrogen source
L-Serine (N)
+0.3
+0.3
+0.2
+0.1
+0.1
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RR42_RS33285
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