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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33235 and RR42_RS33240 are separated by 29 nucleotides
RR42_RS33240 and RR42_RS33245 are separated by 8 nucleotides
RR42_RS33245 and RR42_RS33250 are separated by 305 nucleotides
RR42_RS33250 and RR42_RS33255 are separated by 20 nucleotides
RR42_RS33235: RR42_RS33235 - GDP-mannose 4,6-dehydratase, at 2,870,466 to 2,871,554
_RS33235
RR42_RS33240: RR42_RS33240 - GDP-L-fucose synthase, at 2,871,584 to 2,872,516
_RS33240
RR42_RS33245: RR42_RS33245 - mannose-1-phosphate guanyltransferase, at 2,872,525 to 2,873,949
_RS33245
RR42_RS33250: RR42_RS33250 - tyrosine protein kinase, at 2,874,255 to 2,876,510
_RS33250
RR42_RS33255: RR42_RS33255 - protein-tyrosine phosphatase, at 2,876,531 to 2,876,968
_RS33255
Group
Condition
RR42
_RS33235
RR42
_RS33240
RR42
_RS33245
RR42
_RS33250
RR42
_RS33255
nitrogen source
D-Alanine (N)
-4.1
-5.3
-3.7
-4.0
-6.0
nitrogen source
D-Alanine (N)
-4.1
-5.1
-3.5
-4.9
-5.4
carbon source
L-Lactate (C)
-3.7
-4.7
-4.0
-4.7
-5.8
carbon source
D-Lactate (C)
-3.5
-5.0
-3.9
-4.4
-6.0
carbon source
D-Gluconic Acid (C)
-3.5
-5.5
-3.4
-4.2
-5.9
carbon source
pyruvate (C)
-3.4
-5.0
-4.1
-4.0
-5.7
nitrogen source
Glycine (N)
-3.8
-4.9
-3.7
-4.1
-5.5
carbon source
D,L-Lactate (C)
-4.1
-4.4
-3.8
-3.8
-5.7
nitrogen source
L-Tryptophan (N)
-3.3
-4.6
-3.1
-4.1
-5.9
carbon source
L-Tryptophan (C)
-3.4
-4.1
-3.3
-4.0
-6.0
nitrogen source
L-Phenylalanine (N)
-3.7
-4.4
-3.3
-4.0
-5.2
carbon source
pyruvate (C)
-3.7
-4.7
-3.1
-4.5
-4.5
nitrogen source
nitrate (N)
-3.4
-4.3
-3.5
-4.6
-4.4
nitrogen source
L-Leucine (N)
-3.2
-3.9
-3.2
-4.5
-5.4
carbon source
L-Tryptophan (C)
-2.9
-3.8
-3.8
-3.9
-5.9
nitrogen source
nitrite (N)
-3.5
-4.4
-3.5
-4.3
-4.3
carbon source
D-Lactate (C)
-3.7
-4.9
-2.6
-3.5
-5.1
carbon source
a-Ketoglutaric (C)
-3.6
-4.7
-2.9
-3.9
-4.4
nitrogen source
L-Leucine (N)
-3.2
-3.9
-2.8
-4.3
-5.4
carbon source
succinate (C)
-3.2
-4.2
-3.2
-3.0
-5.9
carbon source
D-Fructose (C)
-2.9
-4.3
-3.2
-3.9
-5.1
nitrogen source
L-Tryptophan (N)
-3.0
-3.8
-3.3
-3.8
-5.4
carbon source
L-Malic (C)
-2.7
-3.5
-3.2
-4.0
-5.9
carbon source
D,L-Lactate (C)
-3.9
-4.4
-3.0
-4.3
-3.7
carbon source
a-Ketoglutaric (C)
-2.5
-4.1
-3.0
-3.7
-5.9
carbon source
L-Lactate (C)
-3.1
-4.5
-2.8
-3.7
-5.1
carbon source
succinate (C)
-2.7
-4.2
-2.8
-4.3
-5.2
carbon source
L-Leucine (C)
-2.6
-3.5
-2.8
-3.9
-6.0
carbon source
L-Phenylalanine (C)
-3.1
-4.3
-3.2
-4.5
-3.2
carbon source
L-Alanine (C)
-3.4
-4.2
-3.2
-4.0
-3.5
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