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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33170 and RR42_RS33175 are separated by 173 nucleotides
RR42_RS33175 and RR42_RS33180 are separated by 494 nucleotides
RR42_RS33180 and RR42_RS33185 are separated by 818 nucleotides
RR42_RS33185 and RR42_RS33190 are separated by 91 nucleotides
RR42_RS33170: RR42_RS33170 - hypothetical protein, at 2,846,459 to 2,847,580
_RS33170
RR42_RS33175: RR42_RS33175 - membrane protein, at 2,847,754 to 2,849,463
_RS33175
RR42_RS33180: RR42_RS33180 - hypothetical protein, at 2,849,958 to 2,850,740
_RS33180
RR42_RS33185: RR42_RS33185 - AraC family transcriptional regulator, at 2,851,559 to 2,852,506
_RS33185
RR42_RS33190: RR42_RS33190 - transcriptional regulator, at 2,852,598 to 2,853,347
_RS33190
Group
Condition
RR42
_RS33170
RR42
_RS33175
RR42
_RS33180
RR42
_RS33185
RR42
_RS33190
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
+0.1
-1.4
-0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.2
-2.0
+0.3
-0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.5
-0.8
+0.1
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.6
-2.1
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.3
-1.4
+0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.3
-1.4
+0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.4
-1.6
+0.0
+0.2
nitrogen source
nitrite (N)
+0.0
+0.6
-1.1
+0.0
-0.3
nitrogen source
nitrate (N)
-0.1
+0.4
-0.6
-0.2
-0.1
lb
LB
-0.3
+0.1
-1.2
+0.5
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
+0.6
-0.6
-0.3
+0.2
nitrogen source
L-Tryptophan (N)
-0.2
+0.8
-0.5
-0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.3
+0.5
-0.9
-0.0
+0.1
nitrogen source
D-Alanine (N)
+0.2
+0.6
-0.5
+0.1
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.7
-0.4
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.2
+2.0
-0.4
-0.2
carbon source
Protocatechuic Acid (C)
+0.3
+0.7
-0.3
+0.1
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
-0.5
+1.7
+0.0
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.1
+1.4
+0.1
+0.1
carbon source
L-Proline (C)
+0.2
+0.1
+1.2
+0.1
+0.1
stress
R2A with nitrate 200 mM
+0.0
+0.8
+0.4
+0.1
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.5
+0.4
+2.0
-0.2
+0.1
carbon source
adipate (C)
+0.2
+0.2
+1.2
+0.1
+0.1
carbon source
adipate (C)
+0.1
+0.2
+1.1
+0.2
+0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.5
+0.2
+2.1
+0.1
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.1
+2.1
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.1
+3.3
-0.1
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.1
+4.7
-0.0
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+5.0
+1.3
+0.0
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+5.8
+1.6
-0.1
+0.1
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RR42_RS33175
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RR42_RS33180
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RR42_RS33185
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