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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33150 and RR42_RS33155 are separated by 109 nucleotides
RR42_RS33155 and RR42_RS33160 are separated by 95 nucleotides
RR42_RS33160 and RR42_RS33165 are separated by 200 nucleotides
RR42_RS33165 and RR42_RS33170 are separated by 595 nucleotides
RR42_RS33150: RR42_RS33150 - hypothetical protein, at 2,843,522 to 2,843,872
_RS33150
RR42_RS33155: RR42_RS33155 - hypothetical protein, at 2,843,982 to 2,844,161
_RS33155
RR42_RS33160: RR42_RS33160 - nitrogen fixation protein NifQ, at 2,844,257 to 2,844,829
_RS33160
RR42_RS33165: RR42_RS33165 - acyl-CoA thioesterase, at 2,845,030 to 2,845,863
_RS33165
RR42_RS33170: RR42_RS33170 - hypothetical protein, at 2,846,459 to 2,847,580
_RS33170
Group
Condition
RR42
_RS33150
RR42
_RS33155
RR42
_RS33160
RR42
_RS33165
RR42
_RS33170
stress
R2A with Cisplatin 0.001 mg/ml
-1.4
-0.4
-0.7
+0.2
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-1.4
+0.2
-0.8
+0.1
+0.2
carbon source
D,L-Lactate (C)
-1.0
-0.2
-0.4
+0.2
+0.0
carbon source
Heptanoic (C)
-0.6
-0.3
+0.0
-0.1
-0.4
carbon source
L-Histidine (C)
-0.9
+0.0
-0.4
+0.1
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.8
+0.0
-0.2
-0.2
-0.0
stress
R2A with nitrate 200 mM
-1.0
-0.2
-0.0
+0.1
+0.1
carbon source
a-Ketoglutaric (C)
-0.6
-0.1
-0.3
+0.2
-0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.5
+0.0
-0.5
+0.1
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
-0.7
-0.1
-0.5
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.7
+0.1
+0.1
+0.1
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
-0.9
-0.2
-0.1
+0.2
+0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
-0.1
-0.3
+0.3
-0.5
nitrogen source
D-Alanine (N)
-1.0
+0.2
+0.3
-0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.8
-1.1
-0.2
+0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.6
+0.3
+0.1
-0.2
carbon source
adipate (C)
+0.4
+0.0
-0.4
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.7
-0.3
-0.2
-0.3
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.3
+0.2
-0.2
+0.1
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.1
+0.3
-0.6
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.5
+0.5
-0.3
+0.0
carbon source
L-Malic (C)
-0.3
+0.2
+0.3
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.4
-0.1
-0.4
+0.2
+0.3
nitrogen source
D-Alanine (N)
+0.5
+0.2
+0.2
-0.3
-0.1
carbon source
Octanoic (C)
+0.6
-0.2
-0.0
-0.1
+0.2
r2a
R2A
+0.5
+0.1
-0.3
+0.4
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.7
-0.3
+0.2
+0.0
+0.0
lb
LB
+0.7
+0.0
+0.2
+0.2
-0.3
nitrogen source
Glycine (N)
+0.3
+0.5
+0.2
+0.1
+0.0
carbon source
D-Gluconic Acid (C)
+0.4
+0.2
+0.5
-0.0
+0.3
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