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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33075 and RR42_RS33080 are separated by 24 nucleotides
RR42_RS33080 and RR42_RS33085 are separated by 588 nucleotides
RR42_RS33085 and RR42_RS33090 are separated by 99 nucleotides
RR42_RS33090 and RR42_RS33095 are separated by 326 nucleotides
RR42_RS33075: RR42_RS33075 - dihydrodipicolinate synthetase, at 2,826,307 to 2,827,248
_RS33075
RR42_RS33080: RR42_RS33080 - IclR family transcriptional regulator, at 2,827,273 to 2,828,109
_RS33080
RR42_RS33085: RR42_RS33085 - ligand-gated channel protein, at 2,828,698 to 2,830,917
_RS33085
RR42_RS33090: RR42_RS33090 - fumarate hydratase, at 2,831,017 to 2,832,420
_RS33090
RR42_RS33095: RR42_RS33095 - LysR family transcriptional regulator, at 2,832,747 to 2,833,652
_RS33095
Group
Condition
RR42
_RS33075
RR42
_RS33080
RR42
_RS33085
RR42
_RS33090
RR42
_RS33095
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-1.2
-1.1
+0.3
-0.2
stress
R2A with nitrate 150 mM
+0.0
-1.0
-1.4
+0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.7
-0.4
-0.1
-0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.0
-0.8
-0.9
-0.0
-0.0
stress
R2A with Chloride 300 mM
-0.3
-0.0
-0.5
-0.3
-0.0
carbon source
Protocatechuic Acid (C)
+0.0
-0.6
-0.1
-0.1
+0.0
stress
R2A with nitrate 200 mM
-0.2
-0.3
-0.3
+0.1
-0.1
carbon source
L-Glutamine (C)
-0.1
-0.3
+0.1
-0.4
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
-0.3
-0.3
+0.0
nitrogen source
L-Asparagine (N)
+0.2
-0.1
-0.0
-0.4
-0.2
carbon source
succinate (C)
+0.2
-0.5
-0.1
-0.2
+0.1
nitrogen source
L-Serine (N)
+0.2
-0.4
-0.0
+0.0
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
-0.5
-0.2
+0.2
+0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.1
-0.2
+0.3
-0.4
-0.1
carbon source
L-Proline (C)
+0.1
-0.4
-0.0
+0.2
-0.1
carbon source
Azelaic (C)
-0.1
+0.1
-0.2
-0.2
+0.3
carbon source
L-Malic (C)
+0.3
-0.3
+0.1
-0.2
-0.0
nitrogen source
L-Tryptophan (N)
+0.3
-0.2
+0.1
+0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.5
-0.1
+0.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.1
-0.3
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.6
-0.0
+0.4
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.4
-0.3
+0.6
-0.0
temperature
R2A 37C
+0.1
+0.2
-0.2
+0.5
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.0
+1.0
+0.4
-0.5
-0.0
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
+0.4
+0.3
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.2
+0.3
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.3
+0.3
+0.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.1
-0.0
+2.1
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.3
+1.5
+0.4
+0.0
lb
LB
-0.3
+0.6
+1.2
+2.6
-0.1
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RR42_RS33085
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