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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS33005 and RR42_RS33010 are separated by 501 nucleotides
RR42_RS33010 and RR42_RS33015 are separated by 85 nucleotides
RR42_RS33015 and RR42_RS33020 are separated by 109 nucleotides
RR42_RS33020 and RR42_RS33025 are separated by 109 nucleotides
RR42_RS33005: RR42_RS33005 - type VI secretion protein VasK, at 2,806,309 to 2,809,878
_RS33005
RR42_RS33010: RR42_RS33010 - hypothetical protein, at 2,810,380 to 2,811,633
_RS33010
RR42_RS33015: RR42_RS33015 - hypothetical protein, at 2,811,719 to 2,812,687
_RS33015
RR42_RS33020: RR42_RS33020 - hypothetical protein, at 2,812,797 to 2,813,765
_RS33020
RR42_RS33025: RR42_RS33025 - hypothetical protein, at 2,813,875 to 2,814,939
_RS33025
Group
Condition
RR42
_RS33005
RR42
_RS33010
RR42
_RS33015
RR42
_RS33020
RR42
_RS33025
stress
R2A with Lomefloxacin 0.001 mM
-1.3
-0.1
-0.3
+0.3
+0.3
carbon source
D-Lactate (C)
-0.2
-0.1
+0.1
-0.1
-0.8
stress
R2A with nitrate 150 mM
+0.1
-0.1
-0.2
-0.3
-0.5
stress
R2A with Chlorite 4 mM
-0.3
-0.1
+0.3
-0.1
-0.5
carbon source
Suberic (C)
-0.2
-0.1
-0.3
-0.3
+0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.4
+0.2
-0.2
+0.1
-0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.5
-0.1
-0.3
+0.4
-0.0
carbon source
D,L-Lactate (C)
-0.0
-0.2
-0.4
+0.3
-0.3
nitrogen source
L-Threonine (N)
-0.5
+0.3
-0.3
+0.1
+0.0
carbon source
Heptanoic (C)
+0.4
-0.2
+0.2
+0.1
-0.7
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
-0.2
+0.1
-0.1
+0.4
carbon source
Azelaic (C)
+0.2
+0.0
+0.4
-0.4
-0.3
carbon source
a-Ketoglutaric (C)
-0.3
+0.1
-0.3
+0.1
+0.3
carbon source
L-Histidine (C)
-0.3
-0.3
+0.1
+0.2
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.4
+0.2
+0.0
+0.4
carbon source
adipate (C)
+0.3
-0.3
+0.2
-0.4
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.2
+0.3
-0.0
-0.5
carbon source
Suberic (C)
+0.3
-0.1
+0.2
+0.2
-0.5
temperature
R2A 23C
-0.3
-0.0
-0.2
+0.3
+0.3
carbon source
Dodecandioic (C)
+0.3
-0.2
+0.0
-0.3
+0.4
carbon source
Protocatechuic Acid (C)
+0.4
+0.0
+0.2
-0.5
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.2
+0.1
-0.5
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.3
+0.3
-0.1
+0.4
temperature
R2A 37C
-0.6
+0.1
+0.3
+0.2
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.3
+0.5
+0.2
+0.3
stress
R2A with A22 0.01 mg/ml
+0.2
-0.0
-0.2
-0.0
+0.7
carbon source
Heptanoic (C)
+0.5
-0.1
+0.2
-0.2
+0.2
carbon source
adipate (C)
+0.6
-0.2
+0.2
+0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
+0.2
-0.3
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.0
+0.7
-0.0
+0.2
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