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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32990 and RR42_RS32995 are separated by 223 nucleotides
RR42_RS32995 and RR42_RS33000 are separated by 43 nucleotides
RR42_RS33000 and RR42_RS33005 are separated by 296 nucleotides
RR42_RS33005 and RR42_RS33010 are separated by 501 nucleotides
RR42_RS32990: RR42_RS32990 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,802,645 to 2,803,661
_RS32990
RR42_RS32995: RR42_RS32995 - AsnC family transcriptional regulator, at 2,803,885 to 2,804,394
_RS32995
RR42_RS33000: RR42_RS33000 - hypothetical protein, at 2,804,438 to 2,806,012
_RS33000
RR42_RS33005: RR42_RS33005 - type VI secretion protein VasK, at 2,806,309 to 2,809,878
_RS33005
RR42_RS33010: RR42_RS33010 - hypothetical protein, at 2,810,380 to 2,811,633
_RS33010
Group
Condition
RR42
_RS32990
RR42
_RS32995
RR42
_RS33000
RR42
_RS33005
RR42
_RS33010
stress
R2A with Lomefloxacin 0.001 mM
-0.7
+0.5
-0.1
-1.3
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.9
+0.1
-0.1
+0.1
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.6
+0.2
-0.1
-0.3
-0.2
carbon source
adipate (C)
-0.4
-0.2
-0.2
+0.3
-0.3
carbon source
Dodecandioic (C)
-0.3
-0.6
-0.0
+0.3
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
+0.5
+0.1
-0.2
-0.4
nitrogen source
L-Glutamine (N)
+0.2
-0.7
+0.2
-0.4
+0.1
carbon source
Heptanoic (C)
-0.5
-0.2
-0.0
+0.4
-0.2
temperature
R2A 37C
-0.2
+0.3
-0.0
-0.6
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.3
-0.3
-0.4
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+0.5
-0.2
+0.0
-0.0
carbon source
L-Lactate (C)
-0.2
-0.4
+0.2
+0.2
+0.2
carbon source
Heptanoic (C)
-0.4
-0.1
+0.1
+0.5
-0.1
carbon source
pyruvate (C)
-0.3
-0.3
+0.2
+0.3
+0.1
carbon source
adipate (C)
+0.0
-0.3
-0.2
+0.6
-0.2
carbon source
L-Histidine (C)
+0.2
+0.2
+0.2
-0.3
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
-0.4
-0.2
+0.1
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.7
+0.5
+0.1
+0.1
+0.2
stress
R2A with Zinc 0.1 mM
-0.2
+0.6
+0.1
-0.3
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
-0.1
-0.4
+0.3
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.6
-0.1
+0.1
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.7
-0.1
-0.2
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.2
+0.2
+0.6
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.7
+0.3
+0.2
+0.1
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.5
-0.2
-0.3
+0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.7
+0.2
+0.1
-0.1
-0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.4
+0.3
+0.5
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.6
-0.3
+0.3
-0.1
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.8
+0.1
-0.0
+0.2
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.1
+0.6
+0.1
-0.0
+0.3
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