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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32955 and RR42_RS32960 are separated by 212 nucleotides
RR42_RS32960 and RR42_RS32965 are separated by 74 nucleotides
RR42_RS32965 and RR42_RS32970 are separated by 59 nucleotides
RR42_RS32970 and RR42_RS32975 are separated by 152 nucleotides
RR42_RS32955: RR42_RS32955 - MFS transporter, at 2,791,972 to 2,793,354
_RS32955
RR42_RS32960: RR42_RS32960 - 2-dehydropantoate 2-reductase, at 2,793,567 to 2,794,478
_RS32960
RR42_RS32965: RR42_RS32965 - salicylaldehyde dehydrogenase, at 2,794,553 to 2,796,004
_RS32965
RR42_RS32970: RR42_RS32970 - benzoylformate decarboxylase, at 2,796,064 to 2,797,674
_RS32970
RR42_RS32975: RR42_RS32975 - LysR family transcriptional regulator, at 2,797,827 to 2,798,729
_RS32975
Group
Condition
RR42
_RS32955
RR42
_RS32960
RR42
_RS32965
RR42
_RS32970
RR42
_RS32975
stress
R2A with Lomefloxacin 0.001 mM
-0.9
+0.1
-0.8
-0.3
-0.3
carbon source
L-Malic (C)
+0.2
-0.3
+0.3
-0.2
-2.0
carbon source
L-Lactate (C)
-0.1
+0.4
-0.3
-0.3
-1.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.8
+0.3
-0.2
-3.0
carbon source
Ethanol (C)
-0.0
+0.3
+0.3
-0.0
-1.7
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+1.2
-0.0
-0.2
-1.8
nitrogen source
L-Glutamine (N)
+0.1
+0.7
-0.5
-0.0
-1.2
carbon source
L-Threonine (C)
-0.2
+0.4
+0.1
-0.1
-1.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
+0.2
+0.5
-0.1
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.6
-0.5
-0.2
+0.6
stress
R2A with Chloride 300 mM
-0.0
+0.4
+0.5
-0.1
-1.1
nitrogen source
Glycine (N)
+0.1
+0.9
-0.2
-0.2
-1.0
carbon source
L-Glutamine (C)
+0.0
+1.0
-0.6
-0.1
-0.6
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.6
+0.5
-0.0
-1.3
carbon source
pyruvate (C)
-0.0
+1.0
+0.3
+0.1
-1.7
nitrogen source
L-Isoleucine (N)
+0.0
+0.7
+0.1
+0.1
-1.0
carbon source
Azelaic (C)
-0.3
+0.7
+0.3
-0.1
-0.8
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.6
+0.5
+0.0
-1.0
nitrogen source
L-Serine (N)
+0.1
+0.8
+0.2
-0.1
-0.9
nitrogen source
L-Tryptophan (N)
+0.1
+1.3
+0.0
-0.2
-0.9
stress
R2A with Cobalt chloride 0.5 mM
-0.7
+0.5
-0.1
+0.4
+0.3
lb
LB
+0.3
-0.5
-0.3
-0.2
+1.0
nitrogen source
nitrite (N)
+0.2
+1.1
+0.4
-0.2
-0.9
carbon source
Ethanol (C)
-0.1
+1.0
+0.1
-0.2
+0.7
nitrogen source
L-Valine (N)
+0.3
+1.7
+0.1
-0.1
-0.3
carbon source
succinate (C)
-0.2
+1.0
+0.5
+0.2
+0.2
carbon source
adipate (C)
+0.3
+1.2
+0.8
+0.7
+0.2
carbon source
adipate (C)
+0.1
+1.6
+0.6
+0.6
+0.6
carbon source
Protocatechuic Acid (C)
+0.3
+9.7
+4.0
+5.0
+0.4
carbon source
Protocatechuic Acid (C)
-0.4
+9.2
+4.0
+5.1
+2.1
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