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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32895 and RR42_RS32900 overlap by 8 nucleotides
RR42_RS32900 and RR42_RS32905 are separated by 178 nucleotides
RR42_RS32905 and RR42_RS32910 are separated by 211 nucleotides
RR42_RS32910 and RR42_RS32915 are separated by 36 nucleotides
RR42_RS32895: RR42_RS32895 - ABC transporter permease, at 2,779,281 to 2,780,237
_RS32895
RR42_RS32900: RR42_RS32900 - sugar ABC transporter ATPase, at 2,780,230 to 2,781,738
_RS32900
RR42_RS32905: RR42_RS32905 - cytosine deaminase, at 2,781,917 to 2,783,242
_RS32905
RR42_RS32910: RR42_RS32910 - LysR family transcriptional regulator, at 2,783,454 to 2,784,368
_RS32910
RR42_RS32915: RR42_RS32915 - GDP-mannose dehydrogenase, at 2,784,405 to 2,785,283
_RS32915
Group
Condition
RR42
_RS32895
RR42
_RS32900
RR42
_RS32905
RR42
_RS32910
RR42
_RS32915
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.7
-0.1
-0.7
-0.1
-0.1
carbon source
Octanoic (C)
-1.0
+0.0
-0.4
-0.1
+0.0
nitrogen source
L-Glutamine (N)
-0.8
+0.1
-0.7
+0.1
-0.2
carbon source
succinate (C)
-0.2
+0.3
-1.0
-0.1
-0.1
carbon source
Octanoic (C)
-0.8
+0.2
-0.7
+0.2
+0.0
carbon source
Disodium Glutarate (C)
-0.2
+0.2
-0.9
-0.0
-0.1
carbon source
L-Lactate (C)
+0.2
-0.1
-1.0
+0.1
-0.1
carbon source
Heptanoic (C)
-0.1
+0.3
-1.0
+0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.1
-0.7
-0.3
-0.0
carbon source
propionate (C)
+0.3
-0.1
-0.6
-0.2
-0.0
carbon source
Protocatechuic Acid (C)
-0.7
+0.3
+0.1
-0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.3
+0.0
-0.3
+0.2
carbon source
L-Asparagine (C)
+0.7
-0.1
-0.6
-0.1
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.8
-0.2
-0.3
-0.1
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
-0.2
-0.3
+0.3
-0.1
carbon source
D-Lactate (C)
+0.3
-0.1
+0.4
-0.2
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.2
+0.6
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+1.1
-0.1
-0.7
-0.1
+0.0
carbon source
a-Ketoglutaric (C)
+0.6
-0.1
-0.4
+0.3
-0.1
carbon source
L-Threonine (C)
+0.8
-0.1
-0.3
-0.1
-0.0
nitrogen source
L-Valine (N)
-0.3
+0.1
+0.4
+0.4
-0.2
carbon source
L-Malic (C)
+0.9
-0.1
-0.3
-0.0
-0.1
carbon source
L-Lactate (C)
+0.9
+0.0
-0.2
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+0.1
-0.5
+0.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.5
+0.1
+0.0
+0.4
-0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.5
-0.3
+0.1
+0.3
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.1
+0.4
+0.4
-0.4
r2a
R2A
+0.9
+0.2
+0.1
-0.1
+0.1
temperature
R2A 23C
+0.3
+0.1
+0.7
-0.0
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+1.1
+0.2
+0.1
+0.1
-0.1
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