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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32875 and RR42_RS32880 are separated by 5 nucleotides
RR42_RS32880 and RR42_RS32885 are separated by 64 nucleotides
RR42_RS32885 and RR42_RS32890 are separated by 112 nucleotides
RR42_RS32890 and RR42_RS32895 overlap by 4 nucleotides
RR42_RS32875: RR42_RS32875 - hypothetical protein, at 2,775,978 to 2,776,280
_RS32875
RR42_RS32880: RR42_RS32880 - hydroxyquinol 1,2-dioxygenase, at 2,776,286 to 2,777,173
_RS32880
RR42_RS32885: RR42_RS32885 - LacI family transcriptional regulator, at 2,777,238 to 2,778,203
_RS32885
RR42_RS32890: RR42_RS32890 - ABC transporter permease, at 2,778,316 to 2,779,284
_RS32890
RR42_RS32895: RR42_RS32895 - ABC transporter permease, at 2,779,281 to 2,780,237
_RS32895
Group
Condition
RR42
_RS32875
RR42
_RS32880
RR42
_RS32885
RR42
_RS32890
RR42
_RS32895
carbon source
Protocatechuic Acid (C)
-0.4
+0.8
+0.1
-1.4
-0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.6
-0.2
-0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
+0.2
+0.0
-0.5
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.7
+0.1
-0.0
-0.7
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
-0.2
-0.1
-0.3
-0.1
nitrogen source
nitrate (N)
-0.7
-0.3
+0.2
-0.2
-0.1
carbon source
Octanoic (C)
+0.3
+0.0
+0.1
-0.3
-1.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.6
-0.1
-0.4
-0.3
-0.7
nitrogen source
L-Glutamine (N)
-0.1
+0.3
-0.2
+0.0
-0.8
carbon source
Azelaic (C)
-0.6
+0.3
-0.3
-0.3
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.2
+0.4
-0.7
-0.3
carbon source
Valeric (C)
+0.4
-0.3
-0.1
+0.2
-0.5
r2a
R2A
-0.8
+0.1
-0.3
-0.0
+0.7
carbon source
Valeric (C)
+0.5
+0.2
-0.1
-0.2
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.7
+0.2
+0.1
+0.3
carbon source
L-Asparagine (C)
+0.3
-0.5
-0.2
-0.1
+0.7
carbon source
L-Lactate (C)
+0.1
-0.2
-0.3
-0.1
+0.9
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.5
-0.4
-0.2
+0.4
+0.2
carbon source
Protocatechuic Acid (C)
+0.5
+0.1
+0.1
-0.4
+0.4
carbon source
D-Lactate (C)
+0.7
-0.3
-0.2
+0.3
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.3
+0.0
-0.0
+1.1
nitrogen source
D-Alanine (N)
-0.2
+0.3
-0.1
+0.5
+0.3
r2a
R2A
-0.2
+0.5
-0.1
-0.1
+0.9
carbon source
a-Ketoglutaric (C)
-0.0
-0.3
+0.1
+0.6
+0.6
carbon source
L-Threonine (C)
+0.4
+0.1
-0.1
-0.2
+0.8
stress
R2A with Cobalt chloride 0.5 mM
+0.5
-0.4
+0.0
+0.4
+0.5
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.2
-0.1
+0.2
+0.8
carbon source
pyruvate (C)
+0.6
-0.0
+0.1
+0.1
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
+1.0
+0.1
-0.2
-0.1
+1.1
carbon source
L-Malic (C)
+0.3
+0.1
+0.2
+0.4
+0.9
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