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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32765 and RR42_RS32770 are separated by 101 nucleotides
RR42_RS32770 and RR42_RS32775 are separated by 60 nucleotides
RR42_RS32775 and RR42_RS32780 are separated by 270 nucleotides
RR42_RS32780 and RR42_RS32785 are separated by 19 nucleotides
RR42_RS32765: RR42_RS32765 - hypothetical protein, at 2,746,720 to 2,747,214
_RS32765
RR42_RS32770: RR42_RS32770 - transglycosylase, at 2,747,316 to 2,747,564
_RS32770
RR42_RS32775: RR42_RS32775 - hypothetical protein, at 2,747,625 to 2,747,807
_RS32775
RR42_RS32780: RR42_RS32780 - multidrug transporter, at 2,748,078 to 2,748,986
_RS32780
RR42_RS32785: RR42_RS32785 - chemotaxis protein, at 2,749,006 to 2,750,937
_RS32785
Group
Condition
RR42
_RS32765
RR42
_RS32770
RR42
_RS32775
RR42
_RS32780
RR42
_RS32785
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.5
-0.4
-0.1
-1.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.7
-0.7
-0.8
+0.1
-0.2
carbon source
L-Asparagine (C)
-0.4
+0.0
-0.7
-0.2
-0.7
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.5
-0.5
-0.1
-0.7
carbon source
butyrate (C)
-0.0
-0.5
+0.0
-0.4
-0.9
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.3
-0.8
-0.6
-0.1
-0.4
nitrogen source
L-Valine (N)
-0.7
-0.1
+0.3
-0.4
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.5
-0.6
-0.2
+0.3
carbon source
L-Glutamine (C)
-0.2
-0.1
+0.2
-0.4
-0.8
nitrogen source
D-Alanine (N)
-0.5
+0.3
-0.5
-0.0
-0.5
carbon source
D,L-Lactate (C)
+0.3
+0.1
-0.6
-0.0
-0.9
carbon source
adipate (C)
+0.2
+0.1
-1.0
-0.0
-0.5
carbon source
pyruvate (C)
-0.4
-0.2
+0.5
-0.1
-0.6
nitrogen source
L-Valine (N)
-0.1
+0.5
-0.0
-0.0
-1.1
carbon source
Octanoic (C)
+0.3
-0.3
-0.3
+0.4
-0.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
+0.3
-0.8
+0.3
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.2
+0.4
+0.4
-0.3
carbon source
D,L-Lactate (C)
+0.1
+0.4
+0.3
-0.2
-0.8
nitrogen source
D-Alanine (N)
+0.3
+0.3
+0.2
-0.4
-0.6
nitrogen source
L-Glutamine (N)
+0.8
-0.0
-0.9
-0.0
+0.3
carbon source
L-Malic (C)
-0.2
+0.3
+0.6
+0.0
-0.6
nitrogen source
L-Tryptophan (N)
+0.4
+0.4
-0.5
+0.1
-0.3
carbon source
Dodecandioic (C)
+0.5
+0.3
-0.8
+0.0
+0.1
carbon source
L-Malic (C)
+0.6
+0.1
+0.4
+0.0
-0.7
stress
R2A with Lomefloxacin 0.001 mM
-0.6
-0.3
+0.5
+0.1
+0.9
carbon source
Hexanoic (C)
+0.6
+0.1
+0.6
+0.1
-0.8
stress
R2A with Chloride 300 mM
+0.3
+0.4
-0.3
-0.3
+0.4
carbon source
Suberic (C)
+0.6
+0.4
+0.8
-0.1
-0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
+0.7
+0.6
-0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
+0.4
+1.0
+0.0
+0.5
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RR42_RS32775
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