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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32750 and RR42_RS32755 are separated by 134 nucleotides
RR42_RS32755 and RR42_RS32760 are separated by 311 nucleotides
RR42_RS32760 and RR42_RS32765 are separated by 78 nucleotides
RR42_RS32765 and RR42_RS32770 are separated by 101 nucleotides
RR42_RS32750: RR42_RS32750 - acetyl-CoA carboxylase, at 2,742,684 to 2,744,303
_RS32750
RR42_RS32755: RR42_RS32755 - IclR family transcriptional regulator, at 2,744,438 to 2,745,196
_RS32755
RR42_RS32760: RR42_RS32760 - hypothetical protein, at 2,745,508 to 2,746,641
_RS32760
RR42_RS32765: RR42_RS32765 - hypothetical protein, at 2,746,720 to 2,747,214
_RS32765
RR42_RS32770: RR42_RS32770 - transglycosylase, at 2,747,316 to 2,747,564
_RS32770
Group
Condition
RR42
_RS32750
RR42
_RS32755
RR42
_RS32760
RR42
_RS32765
RR42
_RS32770
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.0
-0.4
-0.5
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.1
-0.3
-0.7
-0.7
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.3
+0.2
-0.6
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.2
-0.4
-0.1
-0.7
nitrogen source
L-Valine (N)
-0.4
+0.1
+0.1
-0.7
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.2
+0.1
-0.7
-0.2
carbon source
Suberic (C)
+0.3
-0.3
+0.1
-0.4
-0.2
carbon source
Protocatechuic Acid (C)
-0.3
-0.6
+0.3
+0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.7
+0.1
+0.3
+0.1
carbon source
Protocatechuic Acid (C)
-0.0
-0.6
+0.2
+0.3
-0.2
nitrogen source
Glycine (N)
-0.1
+0.3
-0.7
-0.0
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.4
-0.0
+0.1
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.6
-0.2
+0.0
-0.4
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.5
-0.1
+0.2
-0.7
carbon source
succinate (C)
+0.2
-0.4
-0.0
+0.6
-0.2
nitrogen source
L-Serine (N)
-0.3
+0.2
-0.2
+0.2
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
-0.0
-0.2
-0.3
+0.7
carbon source
Azelaic (C)
+0.0
-0.3
-0.1
+0.8
-0.1
lb
LB
+0.0
-0.1
+0.6
-0.4
+0.3
carbon source
Pimelic (C)
+0.6
-0.3
+0.1
+0.5
-0.4
stress
R2A with Zinc 0.1 mM
-0.3
+0.2
-0.1
+0.3
+0.4
carbon source
Dodecandioic (C)
+0.3
-0.4
-0.1
+0.5
+0.3
carbon source
L-Histidine (C)
-0.1
+0.2
-0.2
+0.6
+0.1
carbon source
Hexanoic (C)
+0.2
-0.3
+0.0
+0.5
+0.4
stress
R2A with nitrate 150 mM
+0.1
+0.5
-0.0
-0.4
+0.6
carbon source
Suberic (C)
+0.1
+0.1
-0.2
+0.6
+0.4
stress
R2A with Chloride 300 mM
-0.1
+0.2
+0.2
+0.3
+0.4
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
-0.1
+0.1
+0.7
+0.2
nitrogen source
L-Leucine (N)
+0.0
+0.4
-0.0
+0.6
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.1
+0.2
+0.4
+0.8
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RR42_RS32760
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