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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32740 and RR42_RS32745 are separated by 109 nucleotides
RR42_RS32745 and RR42_RS32750 are separated by 46 nucleotides
RR42_RS32750 and RR42_RS32755 are separated by 134 nucleotides
RR42_RS32755 and RR42_RS32760 are separated by 311 nucleotides
RR42_RS32740: RR42_RS32740 - enoyl-CoA hydratase, at 2,740,546 to 2,741,367
_RS32740
RR42_RS32745: RR42_RS32745 - acyl-CoA dehydrogenase, at 2,741,477 to 2,742,637
_RS32745
RR42_RS32750: RR42_RS32750 - acetyl-CoA carboxylase, at 2,742,684 to 2,744,303
_RS32750
RR42_RS32755: RR42_RS32755 - IclR family transcriptional regulator, at 2,744,438 to 2,745,196
_RS32755
RR42_RS32760: RR42_RS32760 - hypothetical protein, at 2,745,508 to 2,746,641
_RS32760
Group
Condition
RR42
_RS32740
RR42
_RS32745
RR42
_RS32750
RR42
_RS32755
RR42
_RS32760
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-3.7
+0.0
-0.2
+0.1
-0.3
carbon source
D-Lactate (C)
-4.1
-0.1
+0.0
+0.1
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
-3.8
+0.0
-0.1
+0.3
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-3.7
+0.1
+0.0
+0.1
-0.0
lb
LB
-4.8
+0.7
+0.0
-0.1
+0.6
carbon source
L-Alanine (C)
-2.8
+0.1
-0.1
-0.3
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
-2.2
-0.1
-0.1
-0.4
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.9
+0.0
-0.4
-0.0
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
-2.3
+0.3
-0.3
-0.7
+0.1
carbon source
L-Alanine (C)
-2.3
+0.1
-0.0
-0.2
-0.2
carbon source
adipate (C)
-1.7
+0.1
-0.1
-0.4
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-2.0
-0.1
+0.0
-0.1
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-2.1
+0.0
-0.2
+0.6
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
-2.0
+0.1
-0.1
+0.2
-0.0
nitrogen source
L-Serine (N)
-1.5
+0.2
-0.3
+0.2
-0.2
carbon source
succinate (C)
-1.7
+0.1
-0.2
+0.2
+0.1
carbon source
L-Histidine (C)
-1.5
+0.3
-0.1
+0.2
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-1.6
+0.3
+0.1
+0.0
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-1.1
-0.5
-0.0
+0.7
-0.0
carbon source
Protocatechuic Acid (C)
+1.0
-0.6
-0.3
-0.6
+0.3
carbon source
Carbon source D,L-Lactate 10 mM
-1.0
+0.5
-0.0
+0.4
+0.3
carbon source
Azelaic (C)
+1.5
-0.4
+0.0
-0.3
-0.1
carbon source
Hexanoic (C)
+1.4
-0.1
+0.2
-0.3
+0.0
carbon source
Suberic (C)
+1.6
-0.5
+0.3
-0.3
+0.1
carbon source
Pimelic (C)
+1.1
+0.1
+0.6
-0.3
+0.1
carbon source
D,L-Lactate (C)
+1.8
-0.0
+0.1
-0.1
-0.1
carbon source
Octanoic (C)
+1.8
-0.0
+0.1
-0.1
+0.0
carbon source
Valeric (C)
+1.7
+0.1
+0.2
-0.1
-0.1
carbon source
Hexanoic (C)
+1.6
-0.0
+0.3
-0.1
+0.1
carbon source
Octanoic (C)
+2.4
+0.3
+0.3
-0.1
+0.1
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