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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32695 and RR42_RS32700 are separated by 174 nucleotides
RR42_RS32700 and RR42_RS32705 are separated by 81 nucleotides
RR42_RS32705 and RR42_RS32710 are separated by 129 nucleotides
RR42_RS32710 and RR42_RS32715 are separated by 162 nucleotides
RR42_RS32695: RR42_RS32695 - Fis family transcriptional regulator, at 2,729,430 to 2,731,145
_RS32695
RR42_RS32700: RR42_RS32700 - alpha/beta hydrolase, at 2,731,320 to 2,732,282
_RS32700
RR42_RS32705: RR42_RS32705 - CoA-transferase, at 2,732,364 to 2,733,581
_RS32705
RR42_RS32710: RR42_RS32710 - hypothetical protein, at 2,733,711 to 2,733,995
_RS32710
RR42_RS32715: RR42_RS32715 - peroxidase, at 2,734,158 to 2,734,811
_RS32715
Group
Condition
RR42
_RS32695
RR42
_RS32700
RR42
_RS32705
RR42
_RS32710
RR42
_RS32715
carbon source
Protocatechuic Acid (C)
+0.2
-0.1
-0.5
-2.1
+0.2
carbon source
Disodium Glutarate (C)
+0.0
-0.3
-0.2
-1.6
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
+0.2
+0.2
-1.8
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
+0.2
-0.1
-1.4
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
+0.0
-0.1
-1.5
+0.3
carbon source
Valeric (C)
-0.1
+0.2
+0.0
-1.1
-0.4
lb
LB
-0.0
-0.2
-0.6
-1.0
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.8
+0.1
-0.2
-0.5
carbon source
Protocatechuic Acid (C)
+0.4
-1.1
-0.5
-0.3
+0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.1
+0.4
-1.8
+0.2
carbon source
Valeric (C)
+0.2
-0.6
-0.2
-0.5
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
+0.0
-0.1
-1.1
-0.2
carbon source
Dodecandioic (C)
+0.2
-0.8
-0.1
+0.2
-0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.1
+0.4
-0.6
-0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.3
-0.4
-0.9
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.5
+0.1
-0.9
+0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.4
+0.2
-0.7
-0.2
nitrogen source
L-Asparagine (N)
-0.3
+0.3
+0.0
+0.4
-0.5
stress
R2A with Zinc 0.1 mM
+0.2
+0.2
-0.1
-0.5
+0.4
carbon source
D,L-Lactate (C)
+0.4
+0.3
-0.1
-0.5
+0.3
carbon source
L-Lactate (C)
-0.2
+0.2
+0.2
+0.6
-0.2
carbon source
propionate (C)
-0.4
+0.4
+0.1
+0.5
-0.1
carbon source
L-Tryptophan (C)
-0.3
+0.4
+0.1
+0.8
-0.0
carbon source
L-Malic (C)
-0.3
+0.1
+0.3
+0.6
+0.3
carbon source
D-Gluconic Acid (C)
-0.1
+0.4
+0.1
+1.0
-0.3
nitrogen source
nitrate (N)
-0.1
+0.6
+0.1
+0.3
+0.3
carbon source
L-Phenylalanine (C)
-0.2
+0.5
+0.2
+0.6
+0.3
nitrogen source
L-Leucine (N)
+0.1
+0.4
-0.1
+1.0
+0.1
nitrogen source
L-Valine (N)
+0.0
+0.6
+0.0
+1.3
-0.4
nitrogen source
L-Lysine (N)
+0.1
+0.7
+0.3
+0.3
+0.1
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