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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32665 and RR42_RS32670 are separated by 15 nucleotides
RR42_RS32670 and RR42_RS32675 are separated by 32 nucleotides
RR42_RS32675 and RR42_RS32680 are separated by 84 nucleotides
RR42_RS32680 and RR42_RS32685 are separated by 10 nucleotides
RR42_RS32665: RR42_RS32665 - phenol hydroxylase, at 2,724,372 to 2,725,439
_RS32665
RR42_RS32670: RR42_RS32670 - phenol hydroxylase, at 2,725,455 to 2,725,814
_RS32670
RR42_RS32675: RR42_RS32675 - phenol 2-monooxygenase, at 2,725,847 to 2,727,361
_RS32675
RR42_RS32680: RR42_RS32680 - monooxygenase, at 2,727,446 to 2,727,718
_RS32680
RR42_RS32685: RR42_RS32685 - phenol hydroxylase, at 2,727,729 to 2,728,724
_RS32685
Group
Condition
RR42
_RS32665
RR42
_RS32670
RR42
_RS32675
RR42
_RS32680
RR42
_RS32685
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-1.6
+0.2
N.D.
-0.5
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-1.9
+0.0
N.D.
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.6
-0.4
+0.1
N.D.
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.5
-0.2
N.D.
-0.7
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
-1.1
-0.2
N.D.
-0.3
carbon source
L-Phenylalanine (C)
+0.1
-1.4
-0.1
N.D.
+0.0
r2a
R2A
-0.4
-1.0
+0.1
N.D.
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.1
-0.9
+0.0
N.D.
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.0
-1.0
+0.2
N.D.
+0.3
carbon source
Dodecandioic (C)
+0.4
-0.9
+0.0
N.D.
+0.1
carbon source
L-Lactate (C)
+0.1
-0.8
-0.0
N.D.
+0.4
stress
R2A with nitrate 200 mM
-0.3
-0.5
-0.0
N.D.
+0.6
carbon source
propionate (C)
+0.1
-0.9
+0.1
N.D.
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.3
-0.1
N.D.
+0.8
carbon source
Disodium Glutarate (C)
+0.8
-0.2
+0.3
N.D.
-0.5
stress
R2A with Chlorite 4 mM
-0.4
+0.6
-0.0
N.D.
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.6
+1.0
-0.1
N.D.
+0.4
carbon source
L-Threonine (C)
-0.3
+0.8
-0.1
N.D.
+0.2
carbon source
L-Asparagine (C)
-0.4
+0.6
+0.1
N.D.
+0.3
carbon source
Protocatechuic Acid (C)
+0.3
+1.1
+0.0
N.D.
-0.6
stress
R2A with Chloride 300 mM
-0.3
+0.7
+0.0
N.D.
+0.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
+1.1
+0.2
N.D.
-0.4
carbon source
Pimelic (C)
+0.6
+0.7
-0.0
N.D.
-0.2
carbon source
L-Asparagine (C)
+0.5
+0.6
-0.2
N.D.
+0.2
carbon source
Hexanoic (C)
+0.5
+0.7
+0.1
N.D.
-0.2
carbon source
D-Lactate (C)
+0.1
+0.9
-0.0
N.D.
+0.4
carbon source
adipate (C)
+0.3
+1.1
-0.0
N.D.
+0.3
nitrogen source
L-Serine (N)
+0.3
+1.2
-0.0
N.D.
+0.1
nitrogen source
casaminos (N)
+0.3
+1.5
-0.0
N.D.
+0.1
lb
LB
-0.2
+1.5
+0.1
N.D.
+0.5
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