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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32610 and RR42_RS32615 are separated by 466 nucleotides
RR42_RS32615 and RR42_RS32620 are separated by 531 nucleotides
RR42_RS32620 and RR42_RS32625 are separated by 100 nucleotides
RR42_RS32625 and RR42_RS32630 are separated by 24 nucleotides
RR42_RS32610: RR42_RS32610 - O-acetylhomoserine aminocarboxypropyltransferase, at 2,712,519 to 2,713,793
_RS32610
RR42_RS32615: RR42_RS32615 - methionine ABC transporter ATPase, at 2,714,260 to 2,715,072
_RS32615
RR42_RS32620: RR42_RS32620 - chemotaxis protein, at 2,715,604 to 2,717,412
_RS32620
RR42_RS32625: RR42_RS32625 - 4-hyroxy-2-oxovalerate aldolase, at 2,717,513 to 2,718,562
_RS32625
RR42_RS32630: RR42_RS32630 - acetaldehyde dehydrogenase, at 2,718,587 to 2,719,531
_RS32630
Group
Condition
RR42
_RS32610
RR42
_RS32615
RR42
_RS32620
RR42
_RS32625
RR42
_RS32630
carbon source
Protocatechuic Acid (C)
-0.2
-0.6
+0.0
-0.6
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.2
-0.6
-0.7
+0.0
carbon source
Valeric (C)
+0.1
-0.3
-0.3
-0.7
-0.1
carbon source
Heptanoic (C)
+0.0
-0.3
-0.1
-0.6
-0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.0
+0.1
-0.4
-0.3
-0.3
carbon source
adipate (C)
+0.1
-0.2
+0.0
-0.7
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.1
+0.1
-0.6
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.5
+0.0
+0.3
-0.4
carbon source
Hexanoic (C)
+0.2
-0.2
-0.3
-0.3
+0.1
nitrogen source
nitrite (N)
-0.4
-0.1
+0.1
-0.3
+0.2
carbon source
L-Histidine (C)
-0.1
-0.0
-0.4
-0.3
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.3
+0.0
-0.3
-0.5
carbon source
succinate (C)
+0.2
-0.1
+0.2
-0.8
+0.2
stress
R2A with nitrate 150 mM
-0.2
+0.1
+0.3
-0.4
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.4
+0.2
+0.2
-0.6
carbon source
Ethanol (C)
+0.0
+0.2
-0.2
-0.4
+0.2
temperature
R2A 37C
+0.1
-0.0
-0.4
+0.4
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.2
+0.4
-0.0
+0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.1
+0.3
+0.4
-0.3
-0.2
stress
R2A with Chlorite 4 mM
-0.1
+0.2
-0.3
-0.1
+0.4
nitrogen source
L-Isoleucine (N)
-0.1
-0.0
+0.2
-0.3
+0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
+0.5
+0.0
-0.4
+0.1
lb
LB
+0.1
+0.3
+0.5
-0.7
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
+0.1
+0.1
-0.4
+0.5
carbon source
Protocatechuic Acid (C)
+0.0
+0.2
-0.3
+0.2
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.2
+0.6
-0.1
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
+0.3
-0.0
-0.4
+0.6
nitrogen source
Glucuronamide (N)
-0.1
+0.1
+0.2
-0.0
+0.6
stress
R2A with Zinc 0.1 mM
-0.1
+0.3
+0.5
+0.4
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.3
+0.3
+0.5
+0.4
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RR42_RS32620
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