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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32555 and RR42_RS32560 are separated by 99 nucleotides
RR42_RS32560 and RR42_RS32565 are separated by 103 nucleotides
RR42_RS32565 and RR42_RS32570 are separated by 123 nucleotides
RR42_RS32570 and RR42_RS32575 overlap by 1 nucleotides
RR42_RS32555: RR42_RS32555 - nitrilotriacetate monooxygenase, at 2,699,425 to 2,700,789
_RS32555
RR42_RS32560: RR42_RS32560 - membrane protein, at 2,700,889 to 2,701,983
_RS32560
RR42_RS32565: RR42_RS32565 - MFS transporter, at 2,702,087 to 2,703,424
_RS32565
RR42_RS32570: RR42_RS32570 - Vanillate O-demethylase oxidoreductase, at 2,703,548 to 2,704,492
_RS32570
RR42_RS32575: RR42_RS32575 - (2Fe-2S)-binding protein, at 2,704,492 to 2,705,538
_RS32575
Group
Condition
RR42
_RS32555
RR42
_RS32560
RR42
_RS32565
RR42
_RS32570
RR42
_RS32575
lb
LB
-0.8
+0.0
-0.2
-0.4
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.3
+0.0
+0.0
-0.3
+0.2
carbon source
L-Malic (C)
-0.9
-0.1
+0.2
-0.4
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.2
-0.0
-0.4
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.6
+0.3
-0.1
-0.5
-0.1
carbon source
L-Lactate (C)
-0.8
-0.2
+0.1
+0.2
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.6
-0.5
+0.5
+0.1
-0.0
stress
R2A with copper (II) chloride 0.25 mM
-0.9
+0.1
+0.1
+0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.3
+0.2
+0.2
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
-0.0
-0.3
-0.2
-0.1
carbon source
adipate (C)
-0.4
-0.1
-0.3
+0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.9
+0.4
+0.6
-0.2
+0.3
carbon source
succinate (C)
+0.5
+0.1
-0.3
-0.2
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+0.3
-0.2
-0.4
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.5
+0.2
+0.1
-0.1
nitrogen source
L-Glutamine (N)
+0.1
-0.1
+0.4
+0.4
-0.4
carbon source
Suberic (C)
+0.7
+0.1
-0.1
-0.1
-0.2
stress
R2A with Chloride 300 mM
+0.8
+0.0
+0.0
-0.2
-0.1
nitrogen source
Glucuronamide (N)
-0.1
-0.1
+0.2
+0.7
-0.2
nitrogen source
L-Isoleucine (N)
+0.3
-0.0
-0.3
+0.4
+0.3
carbon source
Protocatechuic Acid (C)
-1.1
-0.1
-1.8
+4.2
-0.5
carbon source
L-Tryptophan (C)
+0.8
-0.2
+0.1
-0.2
+0.2
carbon source
L-Proline (C)
+0.8
+0.1
-0.2
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
+0.2
-0.1
+0.3
-0.1
temperature
R2A 23C
+0.5
-0.1
+0.3
+0.1
+0.1
nitrogen source
L-Serine (N)
+0.1
+0.1
-0.1
+0.6
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.8
+0.4
-0.2
+0.4
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.8
+0.1
+0.1
+0.3
+0.1
r2a
R2A
+0.7
+0.1
+0.4
+0.4
+0.1
carbon source
Protocatechuic Acid (C)
+0.3
+0.2
-0.9
+4.0
-0.2
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