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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32500 and RR42_RS32505 are separated by 76 nucleotides
RR42_RS32505 and RR42_RS32510 are separated by 1 nucleotides
RR42_RS32510 and RR42_RS32515 are separated by 115 nucleotides
RR42_RS32515 and RR42_RS32520 are separated by 205 nucleotides
RR42_RS32500: RR42_RS32500 - ABC transporter permease, at 2,688,575 to 2,689,426
_RS32500
RR42_RS32505: RR42_RS32505 - sulfonate ABC transporter ATP-binding protein, at 2,689,503 to 2,690,351
_RS32505
RR42_RS32510: RR42_RS32510 - nitrate ABC transporter substrate-binding protein, at 2,690,353 to 2,691,387
_RS32510
RR42_RS32515: RR42_RS32515 - taurine dioxygenase, at 2,691,503 to 2,692,420
_RS32515
RR42_RS32520: RR42_RS32520 - cytochrome C, at 2,692,626 to 2,693,225
_RS32520
Group
Condition
RR42
_RS32500
RR42
_RS32505
RR42
_RS32510
RR42
_RS32515
RR42
_RS32520
lb
LB
-0.5
-0.6
-0.1
+0.2
-1.8
carbon source
Protocatechuic Acid (C)
+0.2
-0.8
-0.1
-0.3
-1.5
nitrogen source
L-Tryptophan (N)
-0.2
+0.0
-0.4
+0.3
-1.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
+0.8
-0.2
-0.3
-2.1
stress
R2A with Cobalt chloride 0.5 mM
-0.3
+0.7
-0.3
-0.0
-1.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.2
-0.0
-0.3
-1.3
carbon source
L-Asparagine (C)
-0.1
+0.6
-0.2
+0.0
-1.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.0
+0.7
+0.2
-0.1
-1.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
+0.7
-0.5
-0.4
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.6
-0.1
-0.5
-0.5
carbon source
L-Lactate (C)
+0.1
+0.3
-0.2
+0.5
-1.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+0.8
+0.0
-0.6
-0.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.3
+0.1
+0.2
-1.0
carbon source
Heptanoic (C)
+0.1
+0.6
-0.1
+0.3
-0.8
stress
R2A with Chloride 300 mM
+0.0
+1.0
-0.6
+0.2
-0.5
stress
R2A with A22 0.01 mg/ml
+0.0
+0.8
-0.1
+0.5
-0.9
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.5
-0.5
-0.3
+0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.8
-0.2
-0.4
+0.4
carbon source
propionate (C)
+0.0
+1.0
+0.1
+0.1
-0.7
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.9
-0.3
-0.3
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.5
+0.5
-0.1
+0.6
carbon source
L-Threonine (C)
+0.1
+1.1
-0.1
+0.2
-0.7
stress
R2A with Lomefloxacin 0.001 mM
+0.5
-1.6
+0.5
-0.4
+1.7
carbon source
L-Lactate (C)
+0.3
+0.8
-0.1
+0.3
-0.6
nitrogen source
L-Serine (N)
+0.2
+0.4
+0.2
-0.7
+0.9
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-0.1
-0.0
-0.4
+1.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.3
+0.5
+0.5
+0.3
stress
R2A with Cephalothin 0.25 mg/ml
+0.2
+0.3
+0.1
+0.1
+1.2
r2a
R2A
+0.2
+0.3
+0.5
+0.2
+1.0
nitrogen source
L-Valine (N)
+0.1
+1.1
+0.3
+0.2
+0.7
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