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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32475 and RR42_RS32480 are separated by 24 nucleotides
RR42_RS32480 and RR42_RS32485 are separated by 131 nucleotides
RR42_RS32485 and RR42_RS32490 are separated by 46 nucleotides
RR42_RS32490 and RR42_RS32495 are separated by 123 nucleotides
RR42_RS32475: RR42_RS32475 - permease, at 2,683,242 to 2,684,201
_RS32475
RR42_RS32480: RR42_RS32480 - 4-hydroxyphenylpyruvate dioxygenase, at 2,684,226 to 2,684,993
_RS32480
RR42_RS32485: RR42_RS32485 - 3-keto-5-aminohexanoate cleavage protein, at 2,685,125 to 2,687,008
_RS32485
RR42_RS32490: RR42_RS32490 - 3-keto-5-aminohexanoate cleavage protein, at 2,687,055 to 2,687,879
_RS32490
RR42_RS32495: RR42_RS32495 - shikimate kinase, at 2,688,003 to 2,688,515
_RS32495
Group
Condition
RR42
_RS32475
RR42
_RS32480
RR42
_RS32485
RR42
_RS32490
RR42
_RS32495
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.1
-0.1
-0.6
-1.3
carbon source
succinate (C)
-0.1
-0.1
-0.4
+0.2
-1.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+0.2
-0.5
-0.2
-0.9
carbon source
Protocatechuic Acid (C)
-0.4
-0.4
+0.1
-0.0
-0.8
nitrogen source
Glycine (N)
-0.1
+0.1
-0.0
-0.1
-1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.6
-0.0
-0.4
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+0.1
+0.1
+0.3
-2.3
nitrogen source
L-Citrulline (N)
-0.2
-0.1
+0.2
+0.2
-1.4
carbon source
Octanoic (C)
+0.2
+0.0
-0.1
-0.1
-1.3
carbon source
L-Tryptophan (C)
+0.1
-0.1
-0.2
-0.0
-1.1
carbon source
L-Tryptophan (C)
-0.4
+0.3
+0.1
-0.1
-1.0
nitrogen source
L-Tryptophan (N)
-0.1
+0.2
-0.0
-0.2
-1.0
carbon source
Azelaic (C)
-0.3
+0.1
-0.2
+0.2
-0.9
nitrogen source
D-Alanine (N)
-0.2
+0.4
-0.1
-0.4
-0.7
carbon source
adipate (C)
+0.1
+0.1
-0.2
+0.4
-1.2
lb
LB
+0.2
-0.9
-0.3
-0.3
+0.7
stress
R2A with Chloride 300 mM
-0.1
-0.3
+0.0
-0.6
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.3
-0.3
+0.5
-0.5
stress
R2A with copper (II) chloride 0.25 mM
-1.0
+0.0
-0.1
+0.3
+0.8
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.4
-0.0
-0.1
+0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
+0.5
-0.1
+0.2
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
-0.3
-0.1
-0.4
+1.1
stress
R2A with Zinc 0.1 mM
-0.5
+0.4
-0.0
-0.2
+0.7
stress
R2A with Chlorite 4 mM
+0.1
-0.1
-0.1
-0.2
+1.0
stress
R2A with nitrate 200 mM
+0.4
-0.1
+0.0
-0.4
+0.8
carbon source
Carbon source Phenylacetic 2.5 mM
-0.4
+0.5
-0.1
-0.1
+0.8
carbon source
Protocatechuic Acid (C)
+0.9
-0.3
-0.1
-0.2
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-0.4
+0.3
+0.2
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
+0.3
-0.0
-0.0
+1.2
stress
R2A with Lomefloxacin 0.001 mM
+1.1
+0.3
-0.0
+0.5
-0.4
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RR42_RS32485
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