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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32300 and RR42_RS32305 are separated by 153 nucleotides
RR42_RS32305 and RR42_RS32310 are separated by 91 nucleotides
RR42_RS32310 and RR42_RS32315 overlap by 1 nucleotides
RR42_RS32315 and RR42_RS32320 are separated by 168 nucleotides
RR42_RS32300: RR42_RS32300 - nickel transporter, at 2,635,828 to 2,636,886
_RS32300
RR42_RS32305: RR42_RS32305 - hypothetical protein, at 2,637,040 to 2,637,963
_RS32305
RR42_RS32310: RR42_RS32310 - toxin YhaV, at 2,638,055 to 2,638,516
_RS32310
RR42_RS32315: RR42_RS32315 - AbrB family transcriptional regulator, at 2,638,516 to 2,638,833
_RS32315
RR42_RS32320: RR42_RS32320 - VWA domain-containing protein, at 2,639,002 to 2,639,568
_RS32320
Group
Condition
RR42
_RS32300
RR42
_RS32305
RR42
_RS32310
RR42
_RS32315
RR42
_RS32320
lb
LB
-1.0
+0.2
-0.6
N.D.
N.D.
nitrogen source
casaminos (N)
-0.6
-0.3
-0.5
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-0.9
+0.1
-0.2
N.D.
N.D.
r2a
R2A
-0.0
-0.3
-0.6
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
-0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.2
-0.4
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.4
-0.0
-0.5
N.D.
N.D.
temperature
R2A 23C
-0.5
-0.2
-0.0
N.D.
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-0.2
-0.2
-0.3
N.D.
N.D.
nitrogen source
nitrite (N)
-0.5
-0.0
-0.2
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.2
+0.1
-0.5
N.D.
N.D.
carbon source
adipate (C)
+0.4
-0.3
-0.6
N.D.
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-0.3
-0.3
N.D.
N.D.
carbon source
Valeric (C)
+0.3
-0.1
-0.7
N.D.
N.D.
stress
R2A with Chloride 300 mM
-0.2
-0.4
+0.1
N.D.
N.D.
carbon source
pyruvate (C)
+0.2
+0.1
-0.4
N.D.
N.D.
carbon source
L-Threonine (C)
-0.5
+0.2
+0.2
N.D.
N.D.
carbon source
Valeric (C)
+0.6
-0.2
-0.3
N.D.
N.D.
carbon source
L-Histidine (C)
+0.5
-0.3
-0.1
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
+0.2
+0.3
N.D.
N.D.
carbon source
butyrate (C)
+0.2
-0.3
+0.3
N.D.
N.D.
carbon source
Disodium Glutarate (C)
+0.4
-0.4
+0.3
N.D.
N.D.
carbon source
Heptanoic (C)
+0.6
+0.1
-0.3
N.D.
N.D.
carbon source
L-Alanine (C)
+0.2
-0.2
+0.4
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.1
-0.0
+0.6
N.D.
N.D.
carbon source
succinate (C)
+0.4
-0.1
+0.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.5
-0.1
+0.1
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
+0.2
+0.5
N.D.
N.D.
temperature
R2A 37C
+0.2
+0.1
+0.5
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.4
-0.0
+0.4
N.D.
N.D.
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